GGDEF family protein - Deinococcus radiodurans

Preferred order of sections

Names and origin

Protein names

Submitted name:
GGDEF family protein EMBL AAF11843.1

Gene names

Ordered Locus Names:

DR_2299

Organism

Deinococcus radiodurans

Taxonomic identifier

1299 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus

Protein attributes

Sequence length	856 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cyclic nucleotide biosynthetic process Inferred from electronic annotation. Source: InterPro intracellular signal transduction Inferred from electronic annotation. Source: InterPro
Molecular function	binding Inferred from electronic annotation. Source: InterPro phosphorus-oxygen lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q9RS28 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: A5382B02A4D47FA6
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FASTA

856

93,628

        10         20         30         40         50         60 
MSTSQGSPNW PRAERVARLE VLETQILARP AEVYAEVLAL WPGLSAAVPS PASPAPDSCP 

        70         80         90        100        110        120 
GPSELAAQAT ALQLLSRCAV LLGEDGAAAN HAETGRRLAH DLGLRSLEAR CLEVLGVVRG 

       130        140        150        160        170        180 
RQGDVKQAAW LLRRSLYLLH ALGDTPGQGR LLGRVGDLLE RLEEYPQALL FYRAGLAQLP 

       190        200        210        220        230        240 
AARPVTAAVQ VGLARTLHQL GEYAESQELA AQALAVCQEV GLPQLEAQVQ LQQALTQLAL 

       250        260        270        280        290        300 
GELDASRRHA EQAQALAAPR HAEQAQALAA PLEHTVPGAA AWVLGEAALV RGDLAQAREG 

       310        320        330        340        350        360 
LGRAEELANT PPLLARVRGS QSRLYEQLGD PAQALRCLRE QRELEQQHRA RLAEQRAGLL 

       370        380        390        400        410        420 
AEQIRYEVLR REAELQRKRR NERAQAASAL RETRVELSRQ ASHDQLTGLA NRSFFYTRAR 

       430        440        450        460        470        480 
QALDLLAPGR SLGLIVADID HLKAINDRFG YAVGDLLITE LARRLCEAVR PGDLVGRLSG 

       490        500        510        520        530        540 
DEFVMLLSDL ASPGDLRLVA ERLLQQLREP CVCGTELVVP TVSLGYVVAP QDGGDVELLQ 

       550        560        570        580        590        600 
KRADLALFQA KAQGRNMAVA FAGDMSAEEE ERRMLSQDLR HAVRHGQLQL HYQGIFLLPG 

       610        620        630        640        650        660 
QRLSGFEALV RWPHPKRGMI PPDRFIALAE ESRLILELGR WVLDEACRQA RAWQLPERGL 

       670        680        690        700        710        720 
TMAVNVSALQ FEQSDFVAGV RACLEQHGLP GHSLVLELTE SMVHRDPRLA KQTLRELQAL 

       730        740        750        760        770        780 
GVKVAMDDFG TGYSSLSMLK SLPFGLLKID REFLQDLSAA SEQFAASQQF IEVMVRLAHN 

       790        800        810        820        830        840 
LQMRVVAEGV ETAEQYDLLC GMGCDEAQGY WLARPLPPAE AAALLPAGAP DSPWPTQSPS 

       850 
SQQARQESPR QSLSED

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References

[1]

"Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1."
White O., Eisen J.A., Heidelberg J.F., Hickey E.K., Peterson J.D., Dodson R.J., Haft D.H., Gwinn M.L., Nelson W.C., Richardson D.L., Moffat K.S., Qin H., Jiang L., Pamphile W., Crosby M., Shen M., Vamathevan J.J., Lam P.

Fraser C.M.
Science 286:1571-1577(1999) [PubMed: 10567266] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE000513 Genomic DNA. Translation: AAF11843.1.
PIR	E75292.
RefSeq	NP_296020.1. NC_001263.1.
3D structure databases
ProteinModelPortal	Q9RS28.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1797658.
GenomeReviews	Gene locus DR_2299 in contig AE000513_GR.
KEGG	dra:DR_2299.
NMPDR	fig\|243230.1.peg.2479.
PATRIC	21632302. VBIDeiRad64572_2528.
TIGR	DR_2299.
Phylogenomic databases
HOGENOM	HBG452556.
OMA	YSASTIN.
Family and domain databases
InterPro	IPR001054. A/G_cyclase. IPR000160. Diguanylate_cyclase-pred. IPR001633. Diguanylate_PEstase_EAL_dom. IPR011990. TPR-like_helical. IPR019734. TPR_repeat. [Graphical view]
Gene3D	G3DSA:3.20.20.450. G3DSA:3.20.20.450. 1 hit. G3DSA:1.25.40.10. TPR-like_helical. 2 hits.
Pfam	PF00563. EAL. 1 hit. PF00990. GGDEF. 1 hit. [Graphical view]
SMART	SM00052. EAL. 1 hit. SM00267. GGDEF. 1 hit. SM00028. TPR. 3 hits. [Graphical view]
SUPFAM	SSF55073. A/G_cyclase. 1 hit. SSF141868. SSF141868. 1 hit.
TIGRFAMs	TIGR00254. GGDEF. 1 hit.
PROSITE	PS50883. EAL. 1 hit. PS50887. GGDEF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9RS28_DEIRA

Accession

Primary (citable) accession number: Q9RS28

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	December 14, 2011
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information