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Protein

50S ribosomal protein L28

Gene

rpmB

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciDRAD243230:GH46-2576-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L28UniRule annotation
Gene namesi
Name:rpmBUniRule annotation
Ordered Locus Names:DR_2524
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 818150S ribosomal protein L28PRO_0000178465Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi243230.DR_2524.

Structurei

Secondary structure

1
81
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi10 – 123Combined sources
Beta strandi23 – 253Combined sources
Beta strandi28 – 336Combined sources
Beta strandi36 – 383Combined sources
Beta strandi54 – 563Combined sources
Helixi64 – 729Combined sources
Beta strandi75 – 773Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ZJPX-ray3.70U1-81[»]
2ZJQX-ray3.30U1-81[»]
2ZJRX-ray2.91U1-81[»]
3CF5X-ray3.30U1-81[»]
3DLLX-ray3.50U1-81[»]
3PIOX-ray3.25U1-81[»]
3PIPX-ray3.45U1-81[»]
4IO9X-ray3.20U1-81[»]
4IOAX-ray3.20U1-81[»]
4IOCX-ray3.60U1-81[»]
4U67X-ray3.65U1-81[»]
4WFNX-ray3.54U1-81[»]
5DM6X-ray2.90U8-79[»]
5DM7X-ray3.00U8-79[»]
ProteinModelPortaliQ9RRG8.
SMRiQ9RRG8. Positions 8-79.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RRG8.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L28P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
HOGENOMiHOG000040463.
KOiK02902.
OMAiYLTGKKN.
OrthoDBiEOG6W727M.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28.
InterProiIPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9RRG8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRECYLTGK KNLVVNSVIR RGKARADGGV GRKTTGITKR VQRANLHKKA
60 70 80
IRENGQVKTV WLSANALRTL SKGPYKGIEL I
Length:81
Mass (Da):8,963
Last modified:May 1, 2000 - v1
Checksum:iB0CAAA1ED0FD24B2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF12065.1.
PIRiC75262.
RefSeqiNP_296244.1. NC_001263.1.
WP_010889149.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF12065; AAF12065; DR_2524.
GeneIDi1798745.
KEGGidra:DR_2524.
PATRICi21632783. VBIDeiRad64572_2766.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF12065.1.
PIRiC75262.
RefSeqiNP_296244.1. NC_001263.1.
WP_010889149.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ZJPX-ray3.70U1-81[»]
2ZJQX-ray3.30U1-81[»]
2ZJRX-ray2.91U1-81[»]
3CF5X-ray3.30U1-81[»]
3DLLX-ray3.50U1-81[»]
3PIOX-ray3.25U1-81[»]
3PIPX-ray3.45U1-81[»]
4IO9X-ray3.20U1-81[»]
4IOAX-ray3.20U1-81[»]
4IOCX-ray3.60U1-81[»]
4U67X-ray3.65U1-81[»]
4WFNX-ray3.54U1-81[»]
5DM6X-ray2.90U8-79[»]
5DM7X-ray3.00U8-79[»]
ProteinModelPortaliQ9RRG8.
SMRiQ9RRG8. Positions 8-79.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2524.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF12065; AAF12065; DR_2524.
GeneIDi1798745.
KEGGidra:DR_2524.
PATRICi21632783. VBIDeiRad64572_2766.

Phylogenomic databases

eggNOGiENOG4106633. Bacteria.
COG0227. LUCA.
HOGENOMiHOG000040463.
KOiK02902.
OMAiYLTGKKN.
OrthoDBiEOG6W727M.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-2576-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9RRG8.

Family and domain databases

HAMAPiMF_00373. Ribosomal_L28.
InterProiIPR026569. Ribo_L28/L24.
IPR001383. Ribosomal_L28.
[Graphical view]
PfamiPF00830. Ribosomal_L28. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00009. L28. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422.

Entry informationi

Entry nameiRL28_DEIRA
AccessioniPrimary (citable) accession number: Q9RRG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: March 16, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.