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Protein
Submitted name:

Putative nucleotide sugar epimerase

Gene

wbnF

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative nucleotide sugar epimeraseImported
Submitted name:
WbnFImported
Gene namesi
Name:wbnFImported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 323320NAD(P)-bd_domInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR008089. Nuc_sugar_epim.
[Graphical view]
PfamiPF16363. GDP_Man_Dehyd. 1 hit.
[Graphical view]
PRINTSiPR01713. NUCEPIMERASE.
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9RP53-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFLVTGAAG FIGFYVSKRL LAAGHQVVGI DNLNDYYDVN LKQARLDLLK
60 70 80 90 100
HDNFSFYKID LADREKMAAL FADERFDRVI NLAAQAGVRY SLENPNAYAD
110 120 130 140 150
ANLIGFLNIL EGCRHNNVQH LLYASSSSVY GMNRKMPFST DDSVDHPVSL
160 170 180 190 200
YAATKKANEL MAHTYSHLYG LPTTGLRFFT VYGPWGRPDM ALFKFTKAML
210 220 230 240 250
EGKSIDVYNF GKMKRDFTYI DDIAEAIIRL QDVIPEKDPQ WTVETGSPAT
260 270 280 290 300
SSAPYRVYNI GNSSPVELMD YINALEEALG IEANKNMMPL QPGDVLETSA
310 320 330
DTKALYDVIG FKPETSVKEG VKNFVEWYRN FYKV
Length:334
Mass (Da):37,655
Last modified:May 1, 2000 - v1
Checksum:i737044DEB29FECD7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF172324 Genomic DNA. Translation: AAD50494.1.
AB812030 Genomic DNA. Translation: BAQ01211.1.
AB812057 Genomic DNA. Translation: BAQ01678.1.
RefSeqiWP_000670926.1. NZ_LVON01000059.1.

Genome annotation databases

EnsemblBacteriaiKNF25984; KNF25984; WQ82_22640.
KNF34981; KNF34981; WR10_02810.
KPO84569; KPO84569; ACU87_23535.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF172324 Genomic DNA. Translation: AAD50494.1.
AB812030 Genomic DNA. Translation: BAQ01211.1.
AB812057 Genomic DNA. Translation: BAQ01678.1.
RefSeqiWP_000670926.1. NZ_LVON01000059.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiKNF25984; KNF25984; WQ82_22640.
KNF34981; KNF34981; WR10_02810.
KPO84569; KPO84569; ACU87_23535.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR008089. Nuc_sugar_epim.
[Graphical view]
PfamiPF16363. GDP_Man_Dehyd. 1 hit.
[Graphical view]
PRINTSiPR01713. NUCEPIMERASE.
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular characterization of the locus encoding biosynthesis of the lipopolysaccharide O antigen of Escherichia coli serotype O113."
    Paton A.W., Paton J.C.
    Infect. Immun. 67:5930-5937(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 98NK2Imported.
  2. "A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster."
    Iguchi A., Iyoda S., Kikuchi T., Ogura Y., Katsura K., Ohnishi M., Hayashi T., Thomson N.R.
    DNA Res. 0:0-0(2014)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E3aImported and N282Imported.

Entry informationi

Entry nameiQ9RP53_ECOLX
AccessioniPrimary (citable) accession number: Q9RP53
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 6, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.