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Q9RIK9 (Q9RIK9_THEMA) Unreviewed, UniProtKB/TrEMBL

Last modified September 21, 2011. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:manB EMBL CAB56854.1
OrganismThermotoga maritima EMBL CAB56854.1
Taxonomic identifier2336 [NCBI]
Taxonomic lineageBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga

Protein attributes

Sequence length680 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region563 – 5686Beta-D-mannose binding PDB 1OF4 PDB 1OH4
Region608 – 6103Beta-D-mannose binding PDB 1OF4 PDB 1OH4

Sites

Metal binding5161Calcium; via carbonyl oxygen PDB 1OF3 PDB 1OF4 PDB 1OH4
Metal binding5481Calcium; via carbonyl oxygen PDB 1OF3 PDB 1OF4 PDB 1OH4
Metal binding5501Calcium; via carbonyl oxygen PDB 1OF3 PDB 1OF4 PDB 1OH4
Metal binding6691Calcium PDB 1OF3 PDB 1OF4 PDB 1OH4
Binding site5991Beta-D-mannose PDB 1OF4 PDB 1OH4
Binding site6141Beta-D-mannose PDB 1OF4 PDB 1OH4

Sequences

Sequence LengthMass (Da)Tools
Q9RIK9 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 5BA3F6982194D1AA

FASTA68077,687
        10         20         30         40         50         60 
MGIGGDDSWS PSVSAEFLLL IVELSFVLFA SDEFVKVENG KFALNGKEFR FIGSNNYYMH 

        70         80         90        100        110        120 
YKSNGMIDSV LESARDMGIK VLRIWGFLDG ESYCRDKNTY MHPEPGVFGV PEGISNAQSG 

       130        140        150        160        170        180 
FERLDYTVAK AKELGIKLVI VLVNNWDDFG GMNQYVRWFG GTHHDDFYRD EKIKEEYKKY 

       190        200        210        220        230        240 
VSFLVNHVNT YTGVPYREEP TIMAWELANE PRCETDKSGN TLVEWVKEMS SYIKSLDPNH 

       250        260        270        280        290        300 
LVAVGDEGFF SNYEGFKPYG GEAEWAYNGW SGVDWKKLLS IETVDFGTFH LYPSHWGVSP 

       310        320        330        340        350        360 
ENYAQWGAKW IEDHIKIAKE IGKPVVLEEY GIPKSAPVNR TAIYRLWNDL VYDLGGDGAM 

       370        380        390        400        410        420 
FWMLAGIGEG SDRDERGYYP DYDGFRIVND DSPEAELIRE YAKLFNTGED IREDTCSFIL 

       430        440        450        460        470        480 
PKDGMEIKKT VEVRAGVFDY SNTFEKLSVK VEDLVFENEI EHLGYGIYGF DLDTTRIPDG 

       490        500        510        520        530        540 
EHEMFLEGHF QGKTVKDSIK AKVVNEARYV LAEEVDFSSP EEVKNWWNSG TWQAEFGSPD 

       550        560        570        580        590        600 
IEWNGEVGNG ALQLNVKLPG KSDWEEVRVA RKFERLSECE ILEYDIYIPN VEGLKGRLRP 

       610        620        630        640        650        660 
YAVLNPGWVK IGLDMNNANV ESAEIITFGG KEYRRFHVRI EFDRTAGVKE LHIGVVGDHL 

       670        680 
RYDGPIFIDN VRLYKRTGGM 

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References

[1]"Amino Acid Sequence of beta-mannosidase genes from the hyperthermophilic bacteria Thermotoga maritima and Thermotoga neapolitana."
Parker K.N., Lam D., Duffaud G., Snead M.A., Mathur E.J., Kelly R.M.
Submitted (AUG-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MSB8 EMBL CAB56854.1.
[2]"Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate binding module, TmCBM27."
Boraston A.B., Revett T.J., Boraston C.M., Nurizzo D., Davies G.J.
Structure 11:665-675(2003) [PubMed: 12791255] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.35 ANGSTROMS) OF 505-680 IN COMPLEX WITH BETA-D-MANNOSE AND CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Y17980 Genomic DNA. Translation: CAB56854.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1OF3X-ray2.00A/B505-680[»]
1OF4X-ray1.60A505-680[»]
1OH4X-ray1.35A505-680[»]
ProteinModelPortalQ9RIK9.
SMRQ9RIK9. Positions 507-680.
ModBaseSearch...

Protein family/group databases

CAZyCBM27. Carbohydrate-Binding Module Family 27.
GH5. Glycoside Hydrolase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR015295. Carb-bd_module_27.
IPR008979. Galactose-bd-like.
IPR001547. Glyco_hydro_5.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PfamPF09212. CBM27. 1 hit.
PF00150. Cellulase. 1 hit.
[Graphical view]
SUPFAMSSF49785. Gal_bind_like. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9RIK9_THEMA
AccessionPrimary (citable) accession number: Q9RIK9
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: September 21, 2011
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)