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Protein

Endo-1,4-beta-xylanase C

Gene

xlnC

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei135NucleophilePROSITE-ProRule annotation1
Active sitei227Proton donorPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidase, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradation

Enzyme and pathway databases

UniPathwayiUPA00114

Protein family/group databases

CAZyiGH11 Glycoside Hydrolase Family 11

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanase C (EC:3.2.1.8)
Short name:
Xylanase C
Alternative name(s):
1,4-beta-D-xylan xylanohydrolase C
Gene namesi
Name:xlnC
Ordered Locus Names:SCO0105
ORF Names:SCJ11.34c
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 49Tat-type signalPROSITE-ProRule annotationAdd BLAST49
ChainiPRO_000029564750 – 241Endo-1,4-beta-xylanase CAdd BLAST192

Post-translational modificationi

Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO0105

Structurei

3D structure databases

ProteinModelPortaliQ9RI72
SMRiQ9RI72
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini51 – 240GH11PROSITE-ProRule annotationAdd BLAST190

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4107T94 Bacteria
ENOG410YH6C LUCA
HOGENOMiHOG000179135
InParanoidiQ9RI72
KOiK01181
OMAiIEYYVVD
OrthoDBiPOG091H0EC9
PhylomeDBiQ9RI72

Family and domain databases

Gene3Di2.60.120.180, 1 hit
InterProiView protein in InterPro
IPR013320 ConA-like_dom_sf
IPR013319 GH11/12
IPR018208 GH11_AS_1
IPR033119 GH11_AS_2
IPR033123 GH11_dom
IPR001137 Glyco_hydro_11
IPR006311 TAT_signal
IPR019546 TAT_signal_bac_arc
PfamiView protein in Pfam
PF00457 Glyco_hydro_11, 1 hit
PRINTSiPR00911 GLHYDRLASE11
SUPFAMiSSF49899 SSF49899, 1 hit
TIGRFAMsiTIGR01409 TAT_signal_seq, 1 hit
PROSITEiView protein in PROSITE
PS00776 GH11_1, 1 hit
PS00777 GH11_2, 1 hit
PS51761 GH11_3, 1 hit
PS51318 TAT, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9RI72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQQDGTQQDR IKQSPAPLNG MSRRGFLGGA GTLALATASG LLLPGTAHAA
60 70 80 90 100
TTITTNQTGT DGMYYSFWTD GGGSVSMTLN GGGSYSTQWT NCGNFVAGKG
110 120 130 140 150
WSTGGRRTVR YNGYFNPSGN GYGCLYGWTS NPLVEYYIVD NWGSYRPTGT
160 170 180 190 200
YKGTVSSDGG TYDIYQTTRY NAPSVEGTKT FQQYWSVRQS KVTSGSGTIT
210 220 230 240
TGNHFDAWAR AGMNMGQFRY YMIMATEGYQ SSGSSNITVS G
Length:241
Mass (Da):25,845
Last modified:May 1, 2000 - v1
Checksum:i37B6E99DE517B78F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939104 Genomic DNA Translation: CAB52919.1
PIRiT37005
RefSeqiNP_624448.1, NC_003888.3
WP_003978772.1, NC_003888.3

Genome annotation databases

EnsemblBacteriaiCAB52919; CAB52919; CAB52919
GeneIDi1095530
KEGGisco:SCO0105
PATRICifig|100226.15.peg.87

Similar proteinsi

Entry informationi

Entry nameiXYNC_STRCO
AccessioniPrimary (citable) accession number: Q9RI72
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health