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Q9RI72 (XYNC_STRCO) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Endo-1,4-beta-xylanase C

Short name=Xylanase C
EC=3.2.1.8
Alternative name(s):
1,4-beta-D-xylan xylanohydrolase C
Gene names
Name:xlnC
Ordered Locus Names:SCO0105
ORF Names:SCJ11.34c
OrganismStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) [Reference proteome] [HAMAP]
Taxonomic identifier100226 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces

Protein attributes

Sequence length241 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.

Pathway

Glycan degradation; xylan degradation.

Subcellular location

Secreted By similarity.

Post-translational modification

Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.

Sequence similarities

Belongs to the glycosyl hydrolase 11 (cellulase G) family.

Ontologies

Keywords
   Biological processCarbohydrate metabolism
Polysaccharide degradation
Xylan degradation
   Cellular componentSecreted
   DomainSignal
   Molecular functionGlycosidase
Hydrolase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processxylan catabolic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Cellular_componentextracellular region

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionendo-1,4-beta-xylanase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 4949Tat-type signal By similarity
Chain50 – 241192Endo-1,4-beta-xylanase C
PRO_0000295647

Sites

Active site1351Nucleophile By similarity
Active site2271Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q9RI72 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 37B6E99DE517B78F

FASTA24125,845
        10         20         30         40         50         60 
MQQDGTQQDR IKQSPAPLNG MSRRGFLGGA GTLALATASG LLLPGTAHAA TTITTNQTGT 

        70         80         90        100        110        120 
DGMYYSFWTD GGGSVSMTLN GGGSYSTQWT NCGNFVAGKG WSTGGRRTVR YNGYFNPSGN 

       130        140        150        160        170        180 
GYGCLYGWTS NPLVEYYIVD NWGSYRPTGT YKGTVSSDGG TYDIYQTTRY NAPSVEGTKT 

       190        200        210        220        230        240 
FQQYWSVRQS KVTSGSGTIT TGNHFDAWAR AGMNMGQFRY YMIMATEGYQ SSGSSNITVS 


G 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL939104 Genomic DNA. Translation: CAB52919.1.
PIRT37005.
RefSeqNP_624448.1. NC_003888.3.

3D structure databases

ProteinModelPortalQ9RI72.
SMRQ9RI72. Positions 53-237.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING100226.SCO0105.

Protein family/group databases

CAZyGH11. Glycoside Hydrolase Family 11.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB52919; CAB52919; CAB52919.
GeneID1095530.
KEGGsco:SCO0105.
PATRIC23729730. VBIStrCoe124346_0087.

Phylogenomic databases

eggNOGNOG05353.
HOGENOMHOG000179135.
KOK01181.
OMAYDILQTT.
OrthoDBEOG63VBWG.
PhylomeDBQ9RI72.
ProtClustDBCLSK2519182.

Enzyme and pathway databases

UniPathwayUPA00114.

Family and domain databases

Gene3D2.60.120.180. 1 hit.
InterProIPR008985. ConA-like_lec_gl_sf.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12.
IPR018208. Glyco_hydro_11_AS.
IPR006311. TAT_signal.
IPR019546. TAT_signal_bac_arc.
[Graphical view]
PfamPF00457. Glyco_hydro_11. 1 hit.
[Graphical view]
PRINTSPR00911. GLHYDRLASE11.
SUPFAMSSF49899. SSF49899. 1 hit.
TIGRFAMsTIGR01409. TAT_signal_seq. 1 hit.
PROSITEPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameXYNC_STRCO
AccessionPrimary (citable) accession number: Q9RI72
Entry history
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: May 1, 2000
Last modified: April 16, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries