Unreviewed, UniProtKB/TrEMBL Q9RGX9 (Q9RGX9_9FLAO)

Names and origin

Protein names

Submitted name:
    Beta-agarase A EMBL AAF21820.1
    EC=3.2.1.81

Gene names

Name:

agaA EMBL AAF21820.1

Organism

Zobellia galactanivorans EMBL AAF21820.1

Taxonomic identifier

63186 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteria › Flavobacteriales › Flavobacteriaceae › Zobellia

Protein attributes

Sequence length	539 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Domain	Signal
Molecular function	Glycosidase Hydrolase
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	beta-agarase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 19	19	Potential EMBL AAF21820.1
	Chain	20 – 539	520	Potential EMBL AAF21820.1		PRO_5000055268
	Chain	20 – 295	276	beta-agarase A EMBL AAF21820.1		PRO_5000055269

Sequences

	Sequence		Length	Mass (Da)
	Q9RGX9-1 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 611AA1B1C509563A	FASTA	539	59,994
	10 20 30 40 50 60 MKKNYLLLYF IFLLCGSIAA QDWNGIPVPA NPGNGMTWQL QDNVSDSFNY TSSEGNRPTA 70 80 90 100 110 120 FTSKWKPSYI NGWTGPGSTI FNAAQAWTNG SQLAIQAQPA GNGKSYNGII TSKNKIQYPV 130 140 150 160 170 180 YMEIKAKIMD QVLANAFWTL TDDETQEIDI MEGYGSDRGG TWFAQRMHLS HHTFIRNPFT 190 200 210 220 230 240 DYQPMGDATW YYNGGTPWRS AYHRYGCYWK DPFTLEYYID GVKVRTVTRA EIDPNNHLGG 250 260 270 280 290 300 TGLNQATNII IDCENQTDWR PAATQEELAD DSKNIFWVDW IRVYKPVAVS GGGNNGNDGA 310 320 330 340 350 360 TEFQYDLGTD TSAVWPGYTR VSNTTRAGNF GWANTNDIGS RDRGASNGRN NINRDINFSS 370 380 390 400 410 420 QTRFFTQDLS NGTYNVLITF GDTYARKNMN VAAEGQNKLT NINTNAGQYV SRSFDVNVND 430 440 450 460 470 480 GKLDLRFSVG NGGDVWSITR IWIRKVTSNS ANLLAAKGLT LEDPVETTEF LYPNPAKTDD 490 500 510 520 530 FVTVPNSEIG SSIIIYNSAG QVVKKVSVVS ENQKISLEGF AKGMYFINLN GQSTKLIVQ

References

[1]	"The endo-beta-agarases AgaA and AgaB from the marine bacterium Zobellia galactanivorans: two paralogue enzymes with different molecular organizations and catalytic behaviours." Jam M., Flament D., Allouch J., Potin P., Thion L., Kloareg B., Czjzek M., Helbert W., Michel G., Barbeyron T. Biochem. J. 385:703-713(2005) [PubMed: 15456406] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Dsij EMBL AAF21820.1.
[2]	"The three-dimensional structures of two beta-agarases." Allouch J., Jam M., Helbert W., Barbeyron T., Kloareg B., Henrissat B., Czjzek M. J. Biol. Chem. 278:47171-47180(2003) [PubMed: 12970344] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.48 ANGSTROMS) OF 20-295.
[3]	"Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double-helical agarose." Allouch J., Helbert W., Henrissat B., Czjzek M. Structure 12:623-632(2004) [PubMed: 15062085] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 20-290.

Cross-references

Sequence databases

EMBLGenBankDDBJ

AF098954 Genomic DNA. Translation: AAF21820.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1O4Y	X-ray	1.48	A	20-295	[»]
1URX	X-ray	1.70	A	20-290	[»]

ModBase

Search...

Protein family/group databases

CAZy

GH16. Glycoside Hydrolase Family 16.

Family and domain databases

InterPro

IPR013320. ConA-like_subgrp.
IPR000757. Glyco_hydro_16.
[Graphical view]

Gene3D

G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.

Pfam

PF00722. Glyco_hydro_16. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9RGX9_9FLAO

Accession

Primary (citable) accession number: Q9RGX9

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	June 16, 2009
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)