Q9RGX8 (Q9RGX8_ZOBGA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Beta-agarase B EMBL AAF21821.1
EC=3.2.1.81 EMBL AAF21821.1

Submitted name:
Beta-agarase B, family GH16 EMBL CAZ97711.1
EC=3.2.1.81 EMBL CAZ97711.1

Gene names

Name:	agaB EMBL AAF21821.1
Ordered Locus Names:	zobellia_3573 EMBL CAZ97711.1

Organism

Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) [Complete proteome] [HAMAP] EMBL AAF21821.1

Taxonomic identifier

63186 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Zobellia

Protein attributes

Sequence length	353 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

Ontologies

Keywords
Domain	Signal EMBL AAF21821.1
Molecular function	Glycosidase EMBL AAF21821.1 Hydrolase
Technical term	3D-structure PDB 1O4Z Complete proteome
Gene Ontology (GO)
Molecular function	beta-agarase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 18	18	Potential EMBL AAF21821.1
	Chain	19 – 353	335	beta-agarase B EMBL AAF21821.1		PRO_5000055270

Sequences

	Sequence		Length	Mass (Da)
	Q9RGX8 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 2281286B0F30F9FC	FASTA	353	40,675
	10 20 30 40 50 60 MYLIYLRLVF CCALLLGCGD NSKFDSATDL PVEQEQEQET EQEGEPEESS EQDLVEEVDW 70 80 90 100 110 120 KDIPVPADAG PNMKWEFQEI SDNFEYEAPA DNKGSEFLEK WDDFYHNAWA GPGLTEWKRD 130 140 150 160 170 180 RSYVADGELK MWATRKPGSD KINMGCITSK TRVVYPVYIE ARAKVMNSTL ASDVWLLSAD 190 200 210 220 230 240 DTQEIDILEA YGADYSESAG KDHSYFSKKV HISHHVFIRD PFQDYQPKDA GSWFEDGTVW 250 260 270 280 290 300 NKEFHRFGVY WRDPWHLEYY IDGVLVRTVS GKDIIDPKHF TNTTDPGNTE IDTRTGLNKE 310 320 330 340 350 MDIIINTEDQ TWRSSPASGL QSNTYTPTDN ELSNIENNTF GVDWIRIYKP VEK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The endo-beta-agarases AgaA and AgaB from the marine bacterium Zobellia galactanivorans: two paralogue enzymes with different molecular organizations and catalytic behaviours." Jam M., Flament D., Allouch J., Potin P., Thion L., Kloareg B., Czjzek M., Helbert W., Michel G., Barbeyron T. Biochem. J. 385:703-713(2005) [PubMed: 15456406] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Dsij EMBL AAF21821.1.
[2]	"The three-dimensional structures of two beta-agarases." Allouch J., Jam M., Helbert W., Barbeyron T., Kloareg B., Henrissat B., Czjzek M. J. Biol. Chem. 278:47171-47180(2003) [PubMed: 12970344] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 19-353.
[3]	Genoscope - CEA Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DsiJT EMBL CAZ97711.1.
[4]	"Complete genome sequence of Zobellia galactanivorans Dsij." Genoscope - CEA Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF098955 Genomic DNA. Translation: AAF21821.1.
FP476056 Genomic DNA. Translation: CAZ97711.1.

RefSeq

YP_004737990.1. NC_015844.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1O4Z	X-ray	2.30	A/B/C/D	19-353	[»]

ProteinModelPortal

Q9RGX8.

SMR

Q9RGX8. Positions 58-353.

ModBase

Search...

Protein family/group databases

CAZy

GH16. Glycoside Hydrolase Family 16.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

10976141.

Organism-specific databases

CMR

Search...

Family and domain databases

InterPro

IPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
[Graphical view]

Gene3D

G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.

SUPFAM

SSF49899. ConA_like_lec_gl. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q9RGX8_ZOBGA

Accession

Primary (citable) accession number: Q9RGX8

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)