ID PR40A_MOUSE Reviewed; 953 AA. AC Q9R1C7; Q61049; Q8BQ76; Q8BRW4; Q8C2U1; DT 22-AUG-2003, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-2000, sequence version 1. DT 24-JAN-2024, entry version 182. DE RecName: Full=Pre-mRNA-processing factor 40 homolog A; DE AltName: Full=Formin-binding protein 11; DE Short=FBP-11; DE AltName: Full=Formin-binding protein 3; GN Name=Prpf40a; Synonyms=Fbp11, Fnbp3; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RA Bedford M.T., Das R., Reed R., Leder P.; RT "FBP11, a mammalian ortholog of the essential yeast splicing factor RT PRP40."; RL Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-380 (ISOFORM 2), AND NUCLEOTIDE RP SEQUENCE [LARGE SCALE MRNA] OF 647-953. RC STRAIN=C57BL/6J, and NOD; RC TISSUE=Aorta, Embryonic spinal ganglion, Thymus, and Vein; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [3] RP NUCLEOTIDE SEQUENCE [MRNA] OF 146-212, AND INTERACTION WITH FORMIN. RC STRAIN=FVB/NJ; RX PubMed=8605874; DOI=10.1002/j.1460-2075.1996.tb00442.x; RA Chan D.C., Bedford M.T., Leder P.; RT "Formin binding proteins bear WWP/WW domains that bind proline-rich RT peptides and functionally resemble SH3 domains."; RL EMBO J. 15:1045-1054(1996). RN [4] RP INTERACTION WITH SF1; SRPK1; ENAH; ATBF1 AND MECP2. RX PubMed=9171351; DOI=10.1093/emboj/16.9.2376; RA Bedford M.T., Chan D.C., Leder P.; RT "FBP WW domains and the Abl SH3 domain bind to a specific class of proline- RT rich ligands."; RL EMBO J. 16:2376-2383(1997). RN [5] RP FUNCTION, SUBCELLULAR LOCATION, AND INTERACTION WITH WASL. RX PubMed=14697212; DOI=10.1016/j.bbrc.2003.11.139; RA Mizutani K., Suetsugu S., Takenawa T.; RT "FBP11 regulates nuclear localization of N-WASP and inhibits N-WASP- RT dependent microspike formation."; RL Biochem. Biophys. Res. Commun. 313:468-474(2004). RN [6] RP INTERACTION WITH AKAP8L, AND SUBCELLULAR LOCATION. RX PubMed=16391387; DOI=10.1385/nmm:7:4:297; RA Sayer J.A., Manczak M., Akileswaran L., Reddy P.H., Coghlan V.M.; RT "Interaction of the nuclear matrix protein NAKAP with HypA and huntingtin: RT implications for nuclear toxicity in Huntington's disease pathogenesis."; RL NeuroMolecular Med. 7:297-310(2005). RN [7] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-928; SER-929; SER-931 AND RP SER-934, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19144319; DOI=10.1016/j.immuni.2008.11.006; RA Trost M., English L., Lemieux S., Courcelles M., Desjardins M., RA Thibault P.; RT "The phagosomal proteome in interferon-gamma-activated macrophages."; RL Immunity 30:143-154(2009). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-34; THR-928; SER-929; SER-931 RP AND SER-934, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE RP ANALYSIS]. RC TISSUE=Brain, Brown adipose tissue, Kidney, Liver, Lung, Spleen, and RC Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). RN [9] RP ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-196, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic fibroblast; RX PubMed=23806337; DOI=10.1016/j.molcel.2013.06.001; RA Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., RA Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.; RT "SIRT5-mediated lysine desuccinylation impacts diverse metabolic RT pathways."; RL Mol. Cell 50:919-930(2013). RN [10] RP METHYLATION [LARGE SCALE ANALYSIS] AT ARG-9, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, and Embryo; RX PubMed=24129315; DOI=10.1074/mcp.o113.027870; RA Guo A., Gu H., Zhou J., Mulhern D., Wang Y., Lee K.A., Yang V., Aguiar M., RA Kornhauser J., Jia X., Ren J., Beausoleil S.A., Silva J.C., Vemulapalli V., RA Bedford M.T., Comb M.J.; RT "Immunoaffinity enrichment and mass spectrometry analysis of protein RT methylation."; RL Mol. Cell. Proteomics 13:372-387(2014). CC -!- FUNCTION: Binds to WASL/N-WASP and suppresses its translocation from CC the nucleus to the cytoplasm, thereby inhibiting its cytoplasmic CC function. Plays a role in the regulation of cell morphology and CC cytoskeletal organization. Required in the control of cell shape and CC migration. May play a role in cytokinesis. May be involved in pre-mRNA CC splicing. {ECO:0000269|PubMed:14697212}. CC -!- SUBUNIT: Interacts with the N-terminus of HTT and with the CC phosphorylated C-terminal domain of POLR2A (By similarity). Interacts CC with AKAP8L, SF1, SRPK1, ENAH, ATBF1 and MECP2. Interacts through the CC WW domains with formin proline-rich regions and with WASL/N-WASP. CC {ECO:0000250, ECO:0000269|PubMed:14697212, ECO:0000269|PubMed:16391387, CC ECO:0000269|PubMed:8605874, ECO:0000269|PubMed:9171351}. CC -!- INTERACTION: CC Q9R1C7; Q9ULX6: AKAP8L; Xeno; NbExp=3; IntAct=EBI-645554, EBI-357530; CC -!- SUBCELLULAR LOCATION: Nucleus speckle. Nucleus matrix. Note=Colocalizes CC with AKAP8L in the nuclear matrix. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9R1C7-1; Sequence=Displayed; CC Name=2; CC IsoId=Q9R1C7-2; Sequence=VSP_008049; CC -!- DOMAIN: The WW domains are essential for localization to nuclear CC speckles. CC -!- SIMILARITY: Belongs to the PRPF40 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF135439; AAD39463.1; -; mRNA. DR EMBL; AK041205; BAC30863.1; -; mRNA. DR EMBL; AK051375; BAC34617.1; -; mRNA. DR EMBL; AK087963; BAC40061.2; -; mRNA. DR EMBL; U40747; AAC52475.1; -; mRNA. DR PIR; S64713; S64713. DR RefSeq; NP_061255.1; NM_018785.2. DR AlphaFoldDB; Q9R1C7; -. DR BMRB; Q9R1C7; -. DR SMR; Q9R1C7; -. DR BioGRID; 207833; 28. DR ELM; Q9R1C7; -. DR IntAct; Q9R1C7; 5. DR MINT; Q9R1C7; -. DR STRING; 10090.ENSMUSP00000075655; -. DR GlyGen; Q9R1C7; 1 site, 1 O-linked glycan (1 site). DR iPTMnet; Q9R1C7; -. DR PhosphoSitePlus; Q9R1C7; -. DR SwissPalm; Q9R1C7; -. DR EPD; Q9R1C7; -. DR jPOST; Q9R1C7; -. DR MaxQB; Q9R1C7; -. DR PaxDb; 10090-ENSMUSP00000075655; -. DR PeptideAtlas; Q9R1C7; -. DR ProteomicsDB; 289391; -. [Q9R1C7-1] DR ProteomicsDB; 289392; -. [Q9R1C7-2] DR Pumba; Q9R1C7; -. DR Antibodypedia; 33687; 116 antibodies from 18 providers. DR DNASU; 56194; -. DR Ensembl; ENSMUST00000239398.2; ENSMUSP00000159339.2; ENSMUSG00000061136.17. [Q9R1C7-1] DR GeneID; 56194; -. DR KEGG; mmu:56194; -. DR UCSC; uc008jrk.2; mouse. [Q9R1C7-1] DR AGR; MGI:1860512; -. DR CTD; 55660; -. DR MGI; MGI:1860512; Prpf40a. DR VEuPathDB; HostDB:ENSMUSG00000061136; -. DR eggNOG; KOG0152; Eukaryota. DR GeneTree; ENSGT00930000150980; -. DR HOGENOM; CLU_005825_0_0_1; -. DR InParanoid; Q9R1C7; -. DR OrthoDB; 25674at2759; -. DR PhylomeDB; Q9R1C7; -. DR TreeFam; TF318732; -. DR Reactome; R-MMU-72163; mRNA Splicing - Major Pathway. DR BioGRID-ORCS; 56194; 22 hits in 79 CRISPR screens. DR ChiTaRS; Prpf40a; mouse. DR PRO; PR:Q9R1C7; -. DR Proteomes; UP000000589; Chromosome 2. DR RNAct; Q9R1C7; Protein. DR Bgee; ENSMUSG00000061136; Expressed in embryonic post-anal tail and 271 other cell types or tissues. DR ExpressionAtlas; Q9R1C7; baseline and differential. DR GO; GO:0016363; C:nuclear matrix; IDA:UniProtKB. DR GO; GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. DR GO; GO:0005634; C:nucleus; IDA:MGI. DR GO; GO:0005685; C:U1 snRNP; IBA:GO_Central. DR GO; GO:0071004; C:U2-type prespliceosome; IBA:GO_Central. DR GO; GO:0070064; F:proline-rich region binding; IDA:MGI. DR GO; GO:0003723; F:RNA binding; IBA:GO_Central. DR GO; GO:0016477; P:cell migration; ISS:UniProtKB. DR GO; GO:0007010; P:cytoskeleton organization; ISS:UniProtKB. DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro. DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central. DR GO; GO:0008360; P:regulation of cell shape; ISS:UniProtKB. DR GO; GO:0032465; P:regulation of cytokinesis; ISS:UniProtKB. DR CDD; cd00201; WW; 2. DR Gene3D; 2.20.70.10; -; 2. DR Gene3D; 1.10.10.440; FF domain; 5. DR InterPro; IPR002713; FF_domain. DR InterPro; IPR036517; FF_domain_sf. DR InterPro; IPR039726; Prp40-like. DR InterPro; IPR001202; WW_dom. DR InterPro; IPR036020; WW_dom_sf. DR PANTHER; PTHR11864:SF20; PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG A; 1. DR PANTHER; PTHR11864; PRE-MRNA-PROCESSING PROTEIN PRP40; 1. DR Pfam; PF01846; FF; 4. DR Pfam; PF00397; WW; 2. DR SMART; SM00441; FF; 5. DR SMART; SM00456; WW; 2. DR SUPFAM; SSF81698; FF domain; 5. DR SUPFAM; SSF51045; WW domain; 2. DR PROSITE; PS51676; FF; 6. DR PROSITE; PS01159; WW_DOMAIN_1; 2. DR PROSITE; PS50020; WW_DOMAIN_2; 2. DR Genevisible; Q9R1C7; MM. PE 1: Evidence at protein level; KW Acetylation; Alternative splicing; Isopeptide bond; Methylation; KW mRNA processing; mRNA splicing; Nucleus; Phosphoprotein; KW Reference proteome; Repeat; Ubl conjugation. FT CHAIN 1..953 FT /note="Pre-mRNA-processing factor 40 homolog A" FT /id="PRO_0000076086" FT DOMAIN 140..173 FT /note="WW 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00224" FT DOMAIN 181..214 FT /note="WW 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00224" FT DOMAIN 389..443 FT /note="FF 1" FT DOMAIN 456..510 FT /note="FF 2" FT DOMAIN 523..583 FT /note="FF 3" FT DOMAIN 603..663 FT /note="FF 4" FT DOMAIN 668..723 FT /note="FF 5" FT DOMAIN 738..795 FT /note="FF 6" FT REGION 1..40 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 348..382 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 799..953 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 348..362 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 364..382 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 803..823 FT /note="Basic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 824..862 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 863..877 FT /note="Basic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 878..923 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 933..953 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 9 FT /note="Omega-N-methylarginine" FT /evidence="ECO:0007744|PubMed:24129315" FT MOD_RES 34 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 151 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 196 FT /note="N6-acetyllysine" FT /evidence="ECO:0007744|PubMed:23806337" FT MOD_RES 341 FT /note="Phosphothreonine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 369 FT /note="Phosphothreonine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 719 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 783 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 879 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 881 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 884 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:O75400" FT MOD_RES 928 FT /note="Phosphothreonine" FT /evidence="ECO:0007744|PubMed:19144319, FT ECO:0007744|PubMed:21183079" FT MOD_RES 929 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19144319, FT ECO:0007744|PubMed:21183079" FT MOD_RES 931 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19144319, FT ECO:0007744|PubMed:21183079" FT MOD_RES 934 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19144319, FT ECO:0007744|PubMed:21183079" FT CROSSLNK 191 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:O75400" FT CROSSLNK 241 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:O75400" FT CROSSLNK 371 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:O75400" FT CROSSLNK 372 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:O75400" FT VAR_SEQ 14..55 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_008049" FT CONFLICT 334 FT /note="E -> A (in Ref. 2; BAC40061)" FT /evidence="ECO:0000305" FT CONFLICT 355 FT /note="T -> I (in Ref. 2; BAC40061)" FT /evidence="ECO:0000305" SQ SEQUENCE 953 AA; 108481 MW; 3C627AB7404D2285 CRC64; MRPGTGAERG GLMVSEMESQ PPSRGPGDGE RRLSGSNLCS SSWVSADGFL RRRPSMGHPG MHYAPMGMHP MGQRANMPPV PHGMMPQMMP PMGGPPMGQM PGMMSSVMSG MMMSHMSQAS MQPALPPGVN SMDVAAGAAS GAKSMWTEHK SPDGRTYYYN TETKQSTWEK PDDLKTPAEQ LLSKCPWKEY KSDSGKPYYY NSQTKESRWA KPKELEDLEG YQNTIVAGGL ITKSNLHAMI KAEESSKQEE CTTASTAPVP TTEIPTTMST MAAAEAAAAV VAAAAAAAAA ANANTSTTPT NTVGSVPVAP EPEVTSIVAT AVDNENTVTV STEEQAQLAN TTAIQDLSGD ISSNTGEEPA KQETVSDFTP KKEEEESQPA KKTYTWNTKE EAKQAFKELL KEKRVPSNAS WEQAMKMIIN DPRYSALAKL SEKKQAFNAY KVQTEKEEKE EARSKYKEAK ESFQRFLENH EKMTSTTRYK KAEQMFGEME VWNAISERDR LEIYEDVLFF LSKKEKEQAK QLRKRNWEAL KNILDNMANV TYSTTWSEAQ QYLMDNPTFA EDEELQNMDK EDALICFEEH IRALEKEEEE EKQKTLLRER RRQRKNRESF QIFLDELHEH GQLHSMSSWM ELYPTISSDI RFTNMLGQPG STALDLFKFY VEDLKARYHD EKKIIKDILK DKGFVVEVNT TFEDFVAIIS STKRSTTLDA GNIKLAFNSL LEKAEARERE REKEEARKMK RKESAFKSML KQATPPIELD AVWEDIRERF VKEPAFEDIT LESERKRIFK DFMHVLEHEC QHHHSKNKKH SKKSKKHHRK RSRSRSGSES DDDDSHSKKK RQRSESHSAS ERSSSAESER SYKKSKKHKK KSKKRRHKSD SPESDTEREK DKKEKDRDSE KDRSRQRSES KHKSPKKKTG KDSGNWDTSG SELSEGELEK RRRTLLEQLD DDQ //