Unreviewed,
UniProtKB/TrEMBL Q9R1B6 (Q9R1B6_RAT)
Last modified
December 15, 2009.
Version 40.
History...
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Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information
Names and origin
| Protein names | Submitted name: Voltage gated calcium channel alpha1B subunit EMBL AAD31922.1 | ||||
| Gene names |
| ||||
| Organism | Rattus norvegicus (Rat) EMBL AAD31922.1 | ||||
| Taxonomic identifier | 10116 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus |
Protein attributes
| Sequence length | 33 AA. |
| Sequence status | Fragment. |
| Protein existence | Evidence at transcript level. |
Ontologies
| Gene Ontology (GO) | |
|---|---|
| Biological process | calcium ion transport Inferred from mutant phenotype. Source: RGD positive regulation of neurotransmitter secretionInferred from mutant phenotype. Source: RGD response to ethanolInferred from expression pattern. Source: RGD response to organic cyclic substanceInferred from direct assay. Source: RGD response to testosterone stimulusInferred from mutant phenotype. Source: RGD |
| Cellular component | cell soma Inferred from direct assay. Source: RGD dendritic shaftInferred from direct assay. Source: RGD integral to membraneInferred from electronic annotation. Source: InterPro nerve terminalInferred from direct assay. Source: RGD plasma membraneInferred from direct assay. Source: RGD synaptosomeInferred from direct assay. Source: RGD |
| Molecular function | voltage-gated calcium channel activity Inferred from mutant phenotype. Source: RGD |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Experimental info | ||||||||
|---|---|---|---|---|---|---|---|---|
| Non-terminal residue | 1 | 1 | EMBL AAD31922.1 | |||||
| Non-terminal residue | 33 | 1 | EMBL AAD31922.1 | |||||
Sequences
References
| [1] | "Alternative splicing of a short cassette exon in alpha1B generates functionally distinct N-type calcium channels in central and peripheral neurons." Lin Z., Lin Y., Schorge S., Pan J.Q., Beierlein M., Lipscombe D. J. Neurosci. 19:5322-5331(1999) [PubMed: 10377343] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAD31922.1. Tissue: Neuronal EMBL AAD31922.1. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF146632 Genomic DNA. Translation: AAD31922.1. |
| IPI | IPI00476965. |
| UniGene | Rn.85880 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q9R1B6. |
Genome annotation databases | |
| Ensembl | ENSRNOT00000042895; ENSRNOP00000046546; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000045118; ENSRNOP00000041710; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000048945; ENSRNOP00000044223; ENSRNOG00000004560; Rattus norvegicus. [Genome view] |
Phylogenomic databases | |
| HOVERGEN | Q9R1B6. |
Gene expression databases | |
| ArrayExpress | Q9R1B6. |
| Genevestigator | Q9R1B6. |
Family and domain databases | |
| InterPro | IPR005447. VDCC_N_a1su. [Graphical view] |
| PANTHER | PTHR10037:SF58. NVDCCAlpha1. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | Q9R1B6_RAT | ||||||||
| Accession | Primary (citable) accession number: Q9R1B6 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||
