Unreviewed, UniProtKB/TrEMBL Q9R1B5 (Q9R1B5_RAT)

Names and origin

Protein names

Submitted name:
    Voltage gated calcium channel alpha1B subunit EMBL AAD31923.1

Gene names

Name:	Cacna1b RGD 628852
Synonyms:	CACHA1B EMBL AAD31923.1

Organism

Rattus norvegicus (Rat) EMBL AAD31923.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	26 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level.

Ontologies

Keywords
Biological process	Ion transport Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU003378V0
Molecular function	Ionic channel RuleBase RU003378V0
Gene Ontology (GO)
Biological process	calcium ion transport Inferred from mutant phenotype. Source: RGD locomotory behavior Inferred from electronic annotation. Source: Compara neurotransmitter secretion Inferred from electronic annotation. Source: Compara positive regulation of neurotransmitter secretion Inferred from mutant phenotype. Source: RGD regulation of blood pressure Inferred from electronic annotation. Source: Compara regulation of heart contraction Inferred from electronic annotation. Source: Compara response to ethanol Inferred from expression pattern. Source: RGD response to organic cyclic substance Inferred from direct assay. Source: RGD response to testosterone stimulus Inferred from mutant phenotype. Source: RGD transmembrane transport Inferred from electronic annotation. Source: InterPro
Cellular component	cell soma Inferred from direct assay. Source: RGD dendritic shaft Inferred from direct assay. Source: RGD nerve terminal Inferred from direct assay. Source: RGD synaptosome Inferred from direct assay. Source: RGD voltage-gated calcium channel complex Inferred from electronic annotation. Source: Compara
Molecular function	protein binding Inferred from electronic annotation. Source: Compara voltage-gated calcium channel activity Inferred from mutant phenotype. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAD31923.1
	Non-terminal residue	26	1	EMBL AAD31923.1

Sequences

	Sequence		Length	Mass (Da)
	Q9R1B5-1 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: D9BBC5079B6B523A	FASTA	26	2,942
	10 20 FRDAWNVFDF VTVLGSITDI LVTEIA

References

[1]

"Alternative splicing of a short cassette exon in alpha1B generates functionally distinct N-type calcium channels in central and peripheral neurons." Lin Z., Lin Y., Schorge S., Pan J.Q., Beierlein M., Lipscombe D. J. Neurosci. 19:5322-5331(1999) [PubMed: 10377343] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAD31923.1. Tissue: Neuronal EMBL AAD31923.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF146633 Genomic DNA. Translation: AAD31923.1.
IPI	IPI00476965.
UniGene	Rn.85880
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q9R1B5.
Genome annotation databases
Ensembl	ENSRNOT00000006162; ENSRNOP00000006162; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000042895; ENSRNOP00000046546; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000045118; ENSRNOP00000041710; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000048945; ENSRNOP00000044223; ENSRNOG00000004560; Rattus norvegicus. [Genome view] ENSRNOT00000065645; ENSRNOP00000063686; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
Phylogenomic databases
HOVERGEN	Q9R1B5.
InParanoid	Q9R1B5.
Gene expression databases
ArrayExpress	Q9R1B5.
Genevestigator	Q9R1B5.
Family and domain databases
InterPro	IPR005821. Ion_trans. IPR005447. VDCC_N_a1su. [Graphical view]
PANTHER	PTHR10037:SF58. NVDCCAlpha1. 1 hit.
Pfam	PF00520. Ion_trans. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9R1B5_RAT

Accession

Primary (citable) accession number: Q9R1B5

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	February 9, 2010
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)