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Unreviewed, UniProtKB/TrEMBL Q9R1B5 (Q9R1B5_RAT)

Last modified February 9, 2010. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Voltage gated calcium channel alpha1B subunit EMBL AAD31923.1
Gene names
Name: Cacna1b RGD 628852
Synonyms: CACHA1B EMBL AAD31923.1
OrganismRattus norvegicus (Rat) EMBL AAD31923.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

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Protein attributes

Sequence length26 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level.

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Ontologies

Keywords
   Biological processIon transport
Transport
   Cellular componentMembrane
   DomainTransmembrane RuleBase RU003378V0
   Molecular functionIonic channel RuleBase RU003378V0
Gene Ontology (GO)
   Biological processcalcium ion transport

Inferred from mutant phenotype. Source: RGD

locomotory behavior

Inferred from electronic annotation. Source: Compara

neurotransmitter secretion

Inferred from electronic annotation. Source: Compara

positive regulation of neurotransmitter secretion

Inferred from mutant phenotype. Source: RGD

regulation of blood pressure

Inferred from electronic annotation. Source: Compara

regulation of heart contraction

Inferred from electronic annotation. Source: Compara

response to ethanol

Inferred from expression pattern. Source: RGD

response to organic cyclic substance

Inferred from direct assay. Source: RGD

response to testosterone stimulus

Inferred from mutant phenotype. Source: RGD

transmembrane transport

Inferred from electronic annotation. Source: InterPro

   Cellular componentcell soma

Inferred from direct assay. Source: RGD

dendritic shaft

Inferred from direct assay. Source: RGD

nerve terminal

Inferred from direct assay. Source: RGD

synaptosome

Inferred from direct assay. Source: RGD

voltage-gated calcium channel complex

Inferred from electronic annotation. Source: Compara

   Molecular functionprotein binding

Inferred from electronic annotation. Source: Compara

voltage-gated calcium channel activity

Inferred from mutant phenotype. Source: RGD

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAD31923.1
Non-terminal residue261 EMBL AAD31923.1

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Sequences

Sequence LengthMass (Da)Tools
Q9R1B5-1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: D9BBC5079B6B523A

FASTA262,942
        10         20 
FRDAWNVFDF VTVLGSITDI LVTEIA

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References

[1]"Alternative splicing of a short cassette exon in alpha1B generates functionally distinct N-type calcium channels in central and peripheral neurons."
Lin Z., Lin Y., Schorge S., Pan J.Q., Beierlein M., Lipscombe D.
J. Neurosci. 19:5322-5331(1999) [PubMed: 10377343] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Sprague-Dawley EMBL AAD31923.1.
Tissue: Neuronal EMBL AAD31923.1.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AF146633 Genomic DNA. Translation: AAD31923.1.
IPIIPI00476965.
UniGeneRn.85880

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ9R1B5.

Genome annotation databases

EnsemblENSRNOT00000006162; ENSRNOP00000006162; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
ENSRNOT00000042895; ENSRNOP00000046546; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
ENSRNOT00000045118; ENSRNOP00000041710; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
ENSRNOT00000048945; ENSRNOP00000044223; ENSRNOG00000004560; Rattus norvegicus. [Genome view]
ENSRNOT00000065645; ENSRNOP00000063686; ENSRNOG00000004560; Rattus norvegicus. [Genome view]

Phylogenomic databases

HOVERGENQ9R1B5.
InParanoidQ9R1B5.

Gene expression databases

ArrayExpressQ9R1B5.
GenevestigatorQ9R1B5.

Family and domain databases

InterProIPR005821. Ion_trans.
IPR005447. VDCC_N_a1su.
[Graphical view]
PANTHERPTHR10037:SF58. NVDCCAlpha1. 1 hit.
PfamPF00520. Ion_trans. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameQ9R1B5_RAT
AccessionPrimary (citable) accession number: Q9R1B5
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: February 9, 2010
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information