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Q9QZS2

- RNF4_MOUSE

UniProt

Q9QZS2 - RNF4_MOUSE

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Protein
E3 ubiquitin-protein ligase RNF4
Gene
Rnf4
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

E3 ubiquitin-protein ligase which binds polysumoylated chains covalently attached to proteins and mediates 'Lys-6'-, 'Lys-11'-, 'Lys-48'- and 'Lys-63'-linked polyubiquitination of those substrates and their subsequent targeting to the proteasome for degradation. Regulates the degradation of several proteins including PML and the transcriptional activator PEA3. Involved in chromosome alignment and spindle assembly, it regulates the kinetochore CENPH-CENPI-CENPK complex by targeting polysumoylated CENPI to proteasomal degradation. Regulates the cellular responses to hypoxia and heat shock through degradation of respectively EPAS1 and PARP1. Alternatively, it may also bind DNA/nucleosomes and have a more direct role in the regulation of transcription for instance enhancing basal transcription and steroid receptor-mediated transcriptional activation.1 Publication

Pathwayi

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri136 – 18146RING-type
Add
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB
  2. SUMO polymer binding Source: UniProtKB
  3. ligase activity Source: UniProtKB-KW
  4. nucleosome binding Source: UniProtKB
  5. protein binding Source: UniProtKB
  6. transcription factor binding Source: MGI
  7. ubiquitin-protein transferase activity Source: UniProtKB
  8. zinc ion binding Source: InterPro

GO - Biological processi

  1. positive regulation of transcription from RNA polymerase II promoter Source: UniProtKB
  2. positive regulation of transcription, DNA-templated Source: UniProtKB
  3. proteasome-mediated ubiquitin-dependent protein catabolic process Source: UniProtKB
  4. protein K11-linked ubiquitination Source: UniProtKB
  5. protein K48-linked ubiquitination Source: UniProtKB
  6. protein K6-linked ubiquitination Source: UniProtKB
  7. protein K63-linked ubiquitination Source: UniProtKB
  8. protein autoubiquitination Source: UniProtKB
  9. regulation of kinetochore assembly Source: UniProtKB
  10. regulation of spindle assembly Source: UniProtKB
  11. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator, Ligase

Keywords - Biological processi

Transcription, Transcription regulation, Ubl conjugation pathway

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiREACT_199115. Antigen processing: Ubiquitination & Proteasome degradation.
UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
E3 ubiquitin-protein ligase RNF4 (EC:6.3.2.-)
Alternative name(s):
RING finger protein 4
Gene namesi
Name:Rnf4
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 5

Organism-specific databases

MGIiMGI:1201691. Rnf4.

Subcellular locationi

Cytoplasm. Nucleus. NucleusPML body By similarity. Nucleusnucleoplasm By similarity

GO - Cellular componenti

  1. PML body Source: UniProtKB-SubCell
  2. cytoplasm Source: UniProtKB
  3. microtubule cytoskeleton Source: Ensembl
  4. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi134 – 1341V → E: Abolishes homodimerization. Strongly reduced E3 ubiquitin ligase activity. 1 Publication
Mutagenesisi155 – 1551S → A: No effect. 1 Publication
Mutagenesisi155 – 1551S → E: Abolishes homodimerization. Strongly reduced E3 ubiquitin ligase activity. 1 Publication
Mutagenesisi161 – 1611V → A: Abolishes homodimerization. Strongly reduced E3 ubiquitin ligase activity. 1 Publication
Mutagenesisi193 – 1931Y → A: Abolishes homodimerization. Loss of E3 ubiquitin ligase activity. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 194194E3 ubiquitin-protein ligase RNF4
PRO_0000056044Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei98 – 981Phosphoserine1 Publication
Modified residuei99 – 991Phosphoserine By similarity

Post-translational modificationi

Sumoylated; conjugated by one or two SUMO1 moieties By similarity.
Autoubiquitinated.

Keywords - PTMi

Phosphoprotein, Ubl conjugation

Proteomic databases

PRIDEiQ9QZS2.

PTM databases

PhosphoSiteiQ9QZS2.

Miscellaneous databases

PMAP-CutDBQ9QZS2.

Expressioni

Tissue specificityi

In the embryo, expressed primarily in the developing nervous system with strong expression in the dorsal root ganglia and gonads. Ubiquitously expressed in the adult.

Developmental stagei

Expression is detected from embryonic day 7 and continues throughout development and into adulthood.

Gene expression databases

ArrayExpressiQ9QZS2.
BgeeiQ9QZS2.
CleanExiMM_RNF4.
GenevestigatoriQ9QZS2.

Interactioni

Subunit structurei

Homodimer (via RING-type zinc finger domain). Interacts with AR/the androgen receptor and TBP By similarity. Interacts with PATZ1 By similarity. Interacts with PML; SUMO1-dependent. Interacts with PML; SUMO2-dependent By similarity. Interacts with TRPS1; negatively regulates the TRPS1 transcriptional repressor activity. Interacts with GSC2. Interacts with TCF20. Interacts with PARP1. Interacts with PML By similarity.5 Publications

Protein-protein interaction databases

BioGridi202920. 2 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ9QZS2.
SMRiQ9QZS2. Positions 129-194.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 2020Required for ubiquitination activity
Add
BLAST
Regioni6 – 6560Mediates interaction with TRPS1
Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi40 – 434SUMO interaction motif 1; mediates the binding to polysumoylated substrates
Motifi50 – 534SUMO interaction motif 2; mediates the binding to polysumoylated substrates
Motifi61 – 633SUMO interaction motif 3; mediates the binding to polysumoylated substrates
Motifi71 – 744SUMO interaction motif 4; mediates the binding to polysumoylated substrates

Domaini

The RING-type zinc finger domain is required for the ubiquitination By similarity.

Sequence similaritiesi

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG327779.
GeneTreeiENSGT00390000010318.
HOVERGENiHBG018577.
InParanoidiQ9QZS2.
OMAiTHRQYHP.
OrthoDBiEOG7SN8F1.
PhylomeDBiQ9QZS2.
TreeFamiTF328387.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9QZS2-1 [UniParc]FASTAAdd to Basket

« Hide

MSTRNPQRKR RGGTVNSRQT QKRTRETTST PEVSLETEPI ELVETVGDEI    50
VDLTCESLEP VVVDLTHNDS VVIVEERRRP RRNGRRLRQD HADSCVVSSD 100
DEELSRDKDV YVTTHTPRST KDDGATGPRP SGTVSCPICM DGYSEIVQNG 150
RLIVSTECGH VFCSQCLRDS LKNANTCPTC RKKINHKRYH PIYI 194
Length:194
Mass (Da):21,911
Last modified:May 1, 2000 - v1
Checksum:i9A0A4277725C62E5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF169300 mRNA. Translation: AAF00620.1.
AK019171 mRNA. Translation: BAB31585.1.
AK090162 mRNA. Translation: BAC41119.1.
AK147057 mRNA. Translation: BAE27641.1.
AK151116 mRNA. Translation: BAE30125.1.
AK158987 mRNA. Translation: BAE34757.1.
AK159778 mRNA. Translation: BAE35362.1.
AK159949 mRNA. Translation: BAE35505.1.
BC003282 mRNA. Translation: AAH03282.1.
U95141 mRNA. Translation: AAC53539.1.
CCDSiCCDS57336.1.
RefSeqiNP_035408.1. NM_011278.4.
XP_006503866.1. XM_006503803.1.
XP_006503867.1. XM_006503804.1.
XP_006503868.1. XM_006503805.1.
UniGeneiMm.21281.

Genome annotation databases

EnsembliENSMUST00000030992; ENSMUSP00000030992; ENSMUSG00000029110.
ENSMUST00000182047; ENSMUSP00000138411; ENSMUSG00000029110.
ENSMUST00000182709; ENSMUSP00000138555; ENSMUSG00000029110.
GeneIDi19822.
KEGGimmu:19822.
UCSCiuc008xcc.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF169300 mRNA. Translation: AAF00620.1 .
AK019171 mRNA. Translation: BAB31585.1 .
AK090162 mRNA. Translation: BAC41119.1 .
AK147057 mRNA. Translation: BAE27641.1 .
AK151116 mRNA. Translation: BAE30125.1 .
AK158987 mRNA. Translation: BAE34757.1 .
AK159778 mRNA. Translation: BAE35362.1 .
AK159949 mRNA. Translation: BAE35505.1 .
BC003282 mRNA. Translation: AAH03282.1 .
U95141 mRNA. Translation: AAC53539.1 .
CCDSi CCDS57336.1.
RefSeqi NP_035408.1. NM_011278.4.
XP_006503866.1. XM_006503803.1.
XP_006503867.1. XM_006503804.1.
XP_006503868.1. XM_006503805.1.
UniGenei Mm.21281.

3D structure databases

ProteinModelPortali Q9QZS2.
SMRi Q9QZS2. Positions 129-194.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 202920. 2 interactions.

PTM databases

PhosphoSitei Q9QZS2.

Proteomic databases

PRIDEi Q9QZS2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000030992 ; ENSMUSP00000030992 ; ENSMUSG00000029110 .
ENSMUST00000182047 ; ENSMUSP00000138411 ; ENSMUSG00000029110 .
ENSMUST00000182709 ; ENSMUSP00000138555 ; ENSMUSG00000029110 .
GeneIDi 19822.
KEGGi mmu:19822.
UCSCi uc008xcc.1. mouse.

Organism-specific databases

CTDi 6047.
MGIi MGI:1201691. Rnf4.

Phylogenomic databases

eggNOGi NOG327779.
GeneTreei ENSGT00390000010318.
HOVERGENi HBG018577.
InParanoidi Q9QZS2.
OMAi THRQYHP.
OrthoDBi EOG7SN8F1.
PhylomeDBi Q9QZS2.
TreeFami TF328387.

Enzyme and pathway databases

UniPathwayi UPA00143 .
Reactomei REACT_199115. Antigen processing: Ubiquitination & Proteasome degradation.

Miscellaneous databases

ChiTaRSi RNF4. mouse.
NextBioi 297289.
PMAP-CutDB Q9QZS2.
PROi Q9QZS2.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9QZS2.
Bgeei Q9QZS2.
CleanExi MM_RNF4.
Genevestigatori Q9QZS2.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
InterProi IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view ]
Pfami PF13639. zf-RING_2. 1 hit.
[Graphical view ]
SMARTi SM00184. RING. 1 hit.
[Graphical view ]
PROSITEi PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Rnf4, a RING protein expressed in the developing nervous and reproductive systems, interacts with Gscl, a gene within the DiGeorge critical region."
    Galili N., Nayak S., Epstein J.A., Buck C.A.
    Dev. Dyn. 218:102-111(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], INTERACTION WITH GSC2.
    Strain: CD-1.
    Tissue: Embryo.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Bone marrow, Embryo, Kidney, Lymph node and Visual cortex.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  4. "Identification and characterization of a novel RING-finger gene (RNF4) mapping at 4p16.3."
    Chiariotti L., Benvenuto G., Fedele M., Santoro M., Simeone A., Fusco A., Bruni C.B.
    Genomics 47:258-265(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 16-178.
    Tissue: Embryo.
  5. "Interaction between the transcription factor SPBP and the positive cofactor RNF4. An interplay between protein binding zinc fingers."
    Lyngsoe C., Bouteiller G., Damgaard C.K., Ryom D., Sanchez-Munoz S., Noerby P.L., Bonven B.J., Joergensen P.
    J. Biol. Chem. 275:26144-26149(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH TCF20.
  6. "The RING finger protein RNF4, a co-regulator of transcription, interacts with the TRPS1 transcription factor."
    Kaiser F.J., Moeroey T., Chang G.T., Horsthemke B., Luedecke H.J.
    J. Biol. Chem. 278:38780-38785(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH TRPS1.
  7. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-98, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  8. "PARP-1 transcriptional activity is regulated by sumoylation upon heat shock."
    Martin N., Schwamborn K., Schreiber V., Werner A., Guillier C., Zhang X.D., Bischof O., Seeler J.S., Dejean A.
    EMBO J. 28:3534-3548(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH PARP1.
  9. "RING domain dimerization is essential for RNF4 function."
    Liew C.W., Sun H., Hunter T., Day C.L.
    Biochem. J. 431:23-29(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, AUTOUBIQUITINATION, MUTAGENESIS OF VAL-134; SER-155; VAL-161 AND TYR-193, SUBUNIT.

Entry informationi

Entry nameiRNF4_MOUSE
AccessioniPrimary (citable) accession number: Q9QZS2
Secondary accession number(s): O35941, Q541Z6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 18, 2001
Last sequence update: May 1, 2000
Last modified: September 3, 2014
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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