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Protein
Submitted name:

Zinc finger protein

Gene

Cpsf4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri34 – 58C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri61 – 88C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri89 – 116C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri117 – 135C3H1-typePROSITE-ProRule annotationAdd BLAST19
Zinc fingeri141 – 167C3H1-typePROSITE-ProRule annotationAdd BLAST27

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger proteinImported
Gene namesi
Name:Cpsf4Imported
Synonyms:CDK106Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620440. Cpsf4.

Structurei

3D structure databases

ProteinModelPortaliQ9QYU6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 58C3H1-typeInterPro annotationAdd BLAST25
Domaini61 – 88C3H1-typeInterPro annotationAdd BLAST28
Domaini89 – 116C3H1-typeInterPro annotationAdd BLAST28
Domaini117 – 135C3H1-typeInterPro annotationAdd BLAST19
Domaini141 – 167C3H1-typeInterPro annotationAdd BLAST27

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri34 – 58C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri61 – 88C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri89 – 116C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri117 – 135C3H1-typePROSITE-ProRule annotationAdd BLAST19
Zinc fingeri141 – 167C3H1-typePROSITE-ProRule annotationAdd BLAST27

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

HOVERGENiHBG051108.

Family and domain databases

InterProiView protein in InterPro
IPR000571. Znf_CCCH.
PfamiView protein in Pfam
PF00642. zf-CCCH. 1 hit.
SMARTiView protein in SMART
SM00356. ZnF_C3H1. 5 hits.
SUPFAMiSSF90229. SSF90229. 2 hits.
PROSITEiView protein in PROSITE
PS50103. ZF_C3H1. 5 hits.

Sequencei

Sequence statusi: Fragment.

Q9QYU6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GTRIASVDHI KFDLEIAVEQ QLGAQPLPFP GMDKSGAAVC EFFLKAACGK
60 70 80 90 100
GGMCPFRHIS GEKTVVCKHW LRGLCKKGDQ CEFLHEYDMT KMPECYFYSK
110 120 130 140 150
FGECSNKECP FLHIDPESKI KDCPWYDRGF CKHGPLQHRH TRRVICVNYL
160 170 180 190 200
VGFCPEGTSC KFMHPRFELP MGTTEQPPLP QQNSSNKPKP PRSLGPAKSN
210 220
TMQATGTPAP EQFLATICEK EDMCFRWFP
Length:229
Mass (Da):25,930
Last modified:May 1, 2000 - v1
Checksum:i676B6F337A8B64D0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17326 mRNA. Translation: CAB56623.1.
UniGeneiRn.104788.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17326 mRNA. Translation: CAB56623.1.
UniGeneiRn.104788.

3D structure databases

ProteinModelPortaliQ9QYU6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi620440. Cpsf4.

Phylogenomic databases

HOVERGENiHBG051108.

Family and domain databases

InterProiView protein in InterPro
IPR000571. Znf_CCCH.
PfamiView protein in Pfam
PF00642. zf-CCCH. 1 hit.
SMARTiView protein in SMART
SM00356. ZnF_C3H1. 5 hits.
SUPFAMiSSF90229. SSF90229. 2 hits.
PROSITEiView protein in PROSITE
PS50103. ZF_C3H1. 5 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ9QYU6_RAT
AccessioniPrimary (citable) accession number: Q9QYU6
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: April 12, 2017
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.