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Protein
Submitted name:

Zinc finger protein

Gene

Cpsf4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri34 – 58C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri61 – 88C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri89 – 116C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri117 – 135C3H1-typePROSITE-ProRule annotationAdd BLAST19
Zinc fingeri141 – 167C3H1-typePROSITE-ProRule annotationAdd BLAST27

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger proteinImported
Gene namesi
Name:Cpsf4Imported
Synonyms:CDK106Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620440 Cpsf4

Structurei

3D structure databases

ProteinModelPortaliQ9QYU6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 58C3H1-typeInterPro annotationAdd BLAST25
Domaini61 – 88C3H1-typeInterPro annotationAdd BLAST28
Domaini89 – 116C3H1-typeInterPro annotationAdd BLAST28
Domaini117 – 135C3H1-typeInterPro annotationAdd BLAST19
Domaini141 – 167C3H1-typeInterPro annotationAdd BLAST27

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri34 – 58C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri61 – 88C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri89 – 116C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri117 – 135C3H1-typePROSITE-ProRule annotationAdd BLAST19
Zinc fingeri141 – 167C3H1-typePROSITE-ProRule annotationAdd BLAST27

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG051108

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 1 hit
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 2 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits

Sequencei

Sequence statusi: Fragment.

Q9QYU6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GTRIASVDHI KFDLEIAVEQ QLGAQPLPFP GMDKSGAAVC EFFLKAACGK
60 70 80 90 100
GGMCPFRHIS GEKTVVCKHW LRGLCKKGDQ CEFLHEYDMT KMPECYFYSK
110 120 130 140 150
FGECSNKECP FLHIDPESKI KDCPWYDRGF CKHGPLQHRH TRRVICVNYL
160 170 180 190 200
VGFCPEGTSC KFMHPRFELP MGTTEQPPLP QQNSSNKPKP PRSLGPAKSN
210 220
TMQATGTPAP EQFLATICEK EDMCFRWFP
Length:229
Mass (Da):25,930
Last modified:May 1, 2000 - v1
Checksum:i676B6F337A8B64D0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17326 mRNA Translation: CAB56623.1
UniGeneiRn.104788

Similar proteinsi

Entry informationi

Entry nameiQ9QYU6_RAT
AccessioniPrimary (citable) accession number: Q9QYU6
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health