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Protein
Submitted name:

Zinc finger protein

Gene

Cpsf4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger proteinImported
Gene namesi
Name:Cpsf4Imported
Synonyms:CDK106Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620440. Cpsf4.

Expressioni

Gene expression databases

GenevestigatoriQ9QYU6.

Structurei

3D structure databases

ProteinModelPortaliQ9QYU6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG051108.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
InterProiIPR000571. Znf_CCCH.
[Graphical view]
PfamiPF00642. zf-CCCH. 2 hits.
[Graphical view]
SMARTiSM00356. ZnF_C3H1. 5 hits.
[Graphical view]
PROSITEiPS50103. ZF_C3H1. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q9QYU6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GTRIASVDHI KFDLEIAVEQ QLGAQPLPFP GMDKSGAAVC EFFLKAACGK
60 70 80 90 100
GGMCPFRHIS GEKTVVCKHW LRGLCKKGDQ CEFLHEYDMT KMPECYFYSK
110 120 130 140 150
FGECSNKECP FLHIDPESKI KDCPWYDRGF CKHGPLQHRH TRRVICVNYL
160 170 180 190 200
VGFCPEGTSC KFMHPRFELP MGTTEQPPLP QQNSSNKPKP PRSLGPAKSN
210 220
TMQATGTPAP EQFLATICEK EDMCFRWFP
Length:229
Mass (Da):25,930
Last modified:May 1, 2000 - v1
Checksum:i676B6F337A8B64D0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17326 mRNA. Translation: CAB56623.1.
UniGeneiRn.104788.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y17326 mRNA. Translation: CAB56623.1.
UniGeneiRn.104788.

3D structure databases

ProteinModelPortaliQ9QYU6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi620440. Cpsf4.

Phylogenomic databases

HOVERGENiHBG051108.

Gene expression databases

GenevestigatoriQ9QYU6.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
InterProiIPR000571. Znf_CCCH.
[Graphical view]
PfamiPF00642. zf-CCCH. 2 hits.
[Graphical view]
SMARTiSM00356. ZnF_C3H1. 5 hits.
[Graphical view]
PROSITEiPS50103. ZF_C3H1. 5 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Zaidi Q.J.
    Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GKImported.

Entry informationi

Entry nameiQ9QYU6_RAT
AccessioniPrimary (citable) accession number: Q9QYU6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: October 29, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.