Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

TATA element modulatory factor

Gene

Tmf1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
TATA element modulatory factorImported
Gene namesi
Name:Tmf1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi620551. Tmf1.

PTM / Processingi

Proteomic databases

PaxDbiQ9QYA5.
PRIDEiQ9QYA5.

Expressioni

Gene expression databases

GenevisibleiQ9QYA5. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000059239.

Structurei

3D structure databases

ProteinModelPortaliQ9QYA5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili451 – 492Sequence analysisAdd BLAST42
Coiled coili507 – 534Sequence analysisAdd BLAST28
Coiled coili583 – 666Sequence analysisAdd BLAST84
Coiled coili676 – 713Sequence analysisAdd BLAST38
Coiled coili736 – 763Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IGA0. Eukaryota.
ENOG410YE9Z. LUCA.
HOGENOMiHOG000154639.
HOVERGENiHBG016599.
KOiK20286.
PhylomeDBiQ9QYA5.

Family and domain databases

InterProiIPR022092. TMF_DNA-bd.
[Graphical view]
PfamiPF12329. TMF_DNA_bd. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9QYA5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWFNASQLS SFAKQALSQA QKSIDRVLDI QEEEPSAWAE AIPYGEPGIS
60 70 80 90 100
PSVSGGWDTS TWGLNSSSEP QSSPTASQAI TKPVRRTVVD ESENFFSAFL
110 120 130 140 150
SPSDVQTIQK SPVVSKPPAK SQRPEEEVKS SLQEPSSPGQ SRTSETAESE
160 170 180 190 200
ATDSACVSGE TPAVGTPSPV PEGKREETAS EESEGKVPTV RAKASESVVK
210 220 230 240 250
VNTAEDVSPT STQSLTTETK DMALEPKEQK HEDRQSNTPS PPVSSFSSGT
260 270 280 290 300
STTSDIEVLD HESVISESSA GSRQETSDAK SSLHLMQTSF QLLSASACPE
310 320 330 340 350
YGRLDDFQKL SESCCSSDAF ERIDSFSVQS LDSRSVSEIN SDDELPGRGY
360 370 380 390 400
ALVPIVVSPS APKTKVVEST EENVEEEEGK RDLIAPSEET ELEESGRSAT
410 420 430 440 450
PVNCDQPDTL ASPTPVNVGP SASGPAAEDG EAAENHPKAP QLEQEDVGKT
460 470 480 490 500
VEFLNEKLEK RETQLLSLSK EKALLEEAYD NLKDEMFRVK EESSSISSLK
510 520 530 540 550
DEFTQRTAEA ERKAQLACKE RDTAKKEMKT MKEELASRLN SSQTADLLKE
560 570 580 590 600
KDEQIQGLME EGEKLSKQQL HNSNMIKKLR AKDKDNESVI AKLKKKAKEL
610 620 630 640 650
EEELQHLRQV LDGKEEVEKQ HRENIKKLNS VVERQEKDLG RLQVDMNELE
660 670 680 690 700
EKSRSTQAAL DSAYRELTDL HKANAAKDSE VQEAALRREM KAKEELSGAL
710 720 730 740 750
EKAQEEARQQ QEILALQVGD LRLALQRAEQ AAARKEDYLR HEISELQQRL
760 770 780 790 800
QEAENRNQEL SQSVSSTTRP LLRQIENLQA TLGSQTSSWE MLEKNLSDRL
810
DLATERRALR LLGKLYH
Length:817
Mass (Da):90,264
Last modified:May 1, 2000 - v1
Checksum:iB432507F306FDAE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF107843 mRNA. Translation: AAF21899.1.
RefSeqiNP_446123.2. NM_053671.2.
UniGeneiRn.91637.

Genome annotation databases

GeneIDi114206.
KEGGirno:114206.
UCSCiRGD:620551. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF107843 mRNA. Translation: AAF21899.1.
RefSeqiNP_446123.2. NM_053671.2.
UniGeneiRn.91637.

3D structure databases

ProteinModelPortaliQ9QYA5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000059239.

Proteomic databases

PaxDbiQ9QYA5.
PRIDEiQ9QYA5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi114206.
KEGGirno:114206.
UCSCiRGD:620551. rat.

Organism-specific databases

CTDi7110.
RGDi620551. Tmf1.

Phylogenomic databases

eggNOGiENOG410IGA0. Eukaryota.
ENOG410YE9Z. LUCA.
HOGENOMiHOG000154639.
HOVERGENiHBG016599.
KOiK20286.
PhylomeDBiQ9QYA5.

Gene expression databases

GenevisibleiQ9QYA5. RN.

Family and domain databases

InterProiIPR022092. TMF_DNA-bd.
[Graphical view]
PfamiPF12329. TMF_DNA_bd. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9QYA5_RAT
AccessioniPrimary (citable) accession number: Q9QYA5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.