Q9QY87 (Q9QY87_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Nuclear factor I-C EMBL AAF23587.1

Gene names

Name:	Nfic RGD 62016
Synonyms:	NFIC EMBL AAF23587.1

Organism

Rattus norvegicus (Rat) EMBL AAF23587.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	144 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS003619
Cellular component	Nucleus SAAS SAAS003619
Gene Ontology (GO)
Biological_process	DNA replication Inferred from electronic annotation. Source: InterPro negative regulation of transcription, DNA-dependent Inferred from direct assay PubMed 18602130. Source: RGD sensory perception of smell Non-traceable author statement Ref.1. Source: RGD transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	nucleus Inferred from direct assay PubMed 18602130. Source: RGD
Molecular_function	core promoter proximal region DNA binding Inferred from direct assay Ref.1. Source: RGD double-stranded DNA binding Inferred from direct assay Ref.1. Source: RGD sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAF23587.1
	Non-terminal residue	144	1	EMBL AAF23587.1

Sequences

	Sequence		Length	Mass (Da)
	Q9QY87 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: D23D544A692A70AC	FASTA	144	16,672
	10 20 30 40 50 60 LLPHVRAFAY TWFNLQARKR KYFKKHEKRM SKDEERAVKD ELLGEKAEVK QKWASRLLAK 70 80 90 100 110 120 LRKDIRPECR EDFVLAVTGK KAPGCVLSNP DQKGKMRRID CLRQADKVWR LDLVMVILFK 130 140 GIPLESTDGE RLVKAAASAH PVLC

References

[1]	"Identification of NFI-binding sites and cloning of NFI-cDNAs suggest a regulatory role for NFI transcription factors in olfactory neuron gene expression." Baumeister H., Gronostajski R.M., Lyons G.E., Margolis F.L. Brain Res. Mol. Brain Res. 72:65-79(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Olfactory epithelium EMBL AAF23587.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF112458 mRNA. Translation: AAF23587.1.
IPI	IPI00391900.
UniGene	Rn.86582.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
UCSC	RGD:62016. rat.
Organism-specific databases
RGD	62016. Nfic.
Phylogenomic databases
HOGENOM	HOG000013028.
HOVERGEN	HBG006561.
InParanoid	Q9QY87.
Gene expression databases
Genevestigator	Q9QY87.
Family and domain databases
InterPro	IPR000647. CTF/NFI. IPR020604. CTF/NFI_DNA-bd-dom. IPR019739. CTF/NFI_DNA-bd_CS. IPR019548. CTF/NFI_DNA-bd_N. IPR003619. MAD_homology1_Dwarfin-type. [Graphical view]
PANTHER	PTHR11492. PTHR11492. 1 hit.
Pfam	PF03165. MH1. 1 hit. PF10524. NfI_DNAbd_pre-N. 1 hit. [Graphical view]
SMART	SM00523. DWA. 1 hit. [Graphical view]
PROSITE	PS00349. CTF_NFI_1. 1 hit. PS51080. CTF_NFI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9QY87_RAT

Accession

Primary (citable) accession number: Q9QY87

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	April 3, 2013
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)