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Q9QY87

- Q9QY87_RAT

UniProt

Q9QY87 - Q9QY87_RAT

Protein
Submitted name:

Nuclear factor I-C

Gene

Nfic

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. core promoter proximal region DNA binding Source: RGD
    2. DNA binding Source: RGD
    3. double-stranded DNA binding Source: RGD
    4. protein binding Source: RGD
    5. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. DNA replication Source: InterPro
    2. negative regulation of transcription, DNA-templated Source: RGD
    3. sensory perception of smell Source: RGD
    4. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Nuclear factor I-CImported
    Gene namesi
    Name:NficImported
    Synonyms:NFICImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi62016. Nfic.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: RGD

    Keywords - Cellular componenti

    NucleusSAAS annotation

    Expressioni

    Gene expression databases

    GenevestigatoriQ9QY87.

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000013028.
    HOVERGENiHBG006561.
    InParanoidiQ9QY87.
    PhylomeDBiQ9QY87.

    Family and domain databases

    InterProiIPR000647. CTF/NFI.
    IPR020604. CTF/NFI_DNA-bd-dom.
    IPR019739. CTF/NFI_DNA-bd_CS.
    IPR019548. CTF/NFI_DNA-bd_N.
    IPR003619. MAD_homology1_Dwarfin-type.
    [Graphical view]
    PANTHERiPTHR11492. PTHR11492. 1 hit.
    PfamiPF03165. MH1. 1 hit.
    PF10524. NfI_DNAbd_pre-N. 1 hit.
    [Graphical view]
    SMARTiSM00523. DWA. 1 hit.
    [Graphical view]
    PROSITEiPS00349. CTF_NFI_1. 1 hit.
    PS51080. CTF_NFI_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q9QY87-1 [UniParc]FASTAAdd to Basket

    « Hide

    LLPHVRAFAY TWFNLQARKR KYFKKHEKRM SKDEERAVKD ELLGEKAEVK    50
    QKWASRLLAK LRKDIRPECR EDFVLAVTGK KAPGCVLSNP DQKGKMRRID 100
    CLRQADKVWR LDLVMVILFK GIPLESTDGE RLVKAAASAH PVLC 144
    Length:144
    Mass (Da):16,672
    Last modified:May 1, 2000 - v1
    Checksum:iD23D544A692A70AC
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported
    Non-terminal residuei144 – 1441Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF112458 mRNA. Translation: AAF23587.1.
    UniGeneiRn.86582.

    Genome annotation databases

    UCSCiRGD:62016. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF112458 mRNA. Translation: AAF23587.1 .
    UniGenei Rn.86582.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:62016. rat.

    Organism-specific databases

    RGDi 62016. Nfic.

    Phylogenomic databases

    HOGENOMi HOG000013028.
    HOVERGENi HBG006561.
    InParanoidi Q9QY87.
    PhylomeDBi Q9QY87.

    Gene expression databases

    Genevestigatori Q9QY87.

    Family and domain databases

    InterProi IPR000647. CTF/NFI.
    IPR020604. CTF/NFI_DNA-bd-dom.
    IPR019739. CTF/NFI_DNA-bd_CS.
    IPR019548. CTF/NFI_DNA-bd_N.
    IPR003619. MAD_homology1_Dwarfin-type.
    [Graphical view ]
    PANTHERi PTHR11492. PTHR11492. 1 hit.
    Pfami PF03165. MH1. 1 hit.
    PF10524. NfI_DNAbd_pre-N. 1 hit.
    [Graphical view ]
    SMARTi SM00523. DWA. 1 hit.
    [Graphical view ]
    PROSITEi PS00349. CTF_NFI_1. 1 hit.
    PS51080. CTF_NFI_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification of NFI-binding sites and cloning of NFI-cDNAs suggest a regulatory role for NFI transcription factors in olfactory neuron gene expression."
      Baumeister H., Gronostajski R.M., Lyons G.E., Margolis F.L.
      Brain Res. Mol. Brain Res. 72:65-79(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Olfactory epitheliumImported.

    Entry informationi

    Entry nameiQ9QY87_RAT
    AccessioniPrimary (citable) accession number: Q9QY87
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)