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Q9QY87

- Q9QY87_RAT

UniProt

Q9QY87 - Q9QY87_RAT

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Protein
Submitted name: Nuclear factor I-C
Gene
Nfic, NFIC
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: RGD
  2. core promoter proximal region DNA binding Source: RGD
  3. double-stranded DNA binding Source: RGD
  4. protein binding Source: RGD
  5. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA replication Source: InterPro
  2. negative regulation of transcription, DNA-templated Source: RGD
  3. sensory perception of smell Source: RGD
  4. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclear factor I-CImported
Gene namesi
Name:NficImported
Synonyms:NFICImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi62016. Nfic.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: RGD
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotations

Expressioni

Gene expression databases

GenevestigatoriQ9QY87.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000013028.
HOVERGENiHBG006561.
InParanoidiQ9QY87.
PhylomeDBiQ9QY87.

Family and domain databases

InterProiIPR000647. CTF/NFI.
IPR020604. CTF/NFI_DNA-bd-dom.
IPR019739. CTF/NFI_DNA-bd_CS.
IPR019548. CTF/NFI_DNA-bd_N.
IPR003619. MAD_homology1_Dwarfin-type.
[Graphical view]
PANTHERiPTHR11492. PTHR11492. 1 hit.
PfamiPF03165. MH1. 1 hit.
PF10524. NfI_DNAbd_pre-N. 1 hit.
[Graphical view]
SMARTiSM00523. DWA. 1 hit.
[Graphical view]
PROSITEiPS00349. CTF_NFI_1. 1 hit.
PS51080. CTF_NFI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q9QY87-1 [UniParc]FASTAAdd to Basket

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LLPHVRAFAY TWFNLQARKR KYFKKHEKRM SKDEERAVKD ELLGEKAEVK    50
QKWASRLLAK LRKDIRPECR EDFVLAVTGK KAPGCVLSNP DQKGKMRRID 100
CLRQADKVWR LDLVMVILFK GIPLESTDGE RLVKAAASAH PVLC 144
Length:144
Mass (Da):16,672
Last modified:May 1, 2000 - v1
Checksum:iD23D544A692A70AC
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei144 – 1441Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF112458 mRNA. Translation: AAF23587.1.
UniGeneiRn.86582.

Genome annotation databases

UCSCiRGD:62016. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF112458 mRNA. Translation: AAF23587.1 .
UniGenei Rn.86582.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi RGD:62016. rat.

Organism-specific databases

RGDi 62016. Nfic.

Phylogenomic databases

HOGENOMi HOG000013028.
HOVERGENi HBG006561.
InParanoidi Q9QY87.
PhylomeDBi Q9QY87.

Gene expression databases

Genevestigatori Q9QY87.

Family and domain databases

InterProi IPR000647. CTF/NFI.
IPR020604. CTF/NFI_DNA-bd-dom.
IPR019739. CTF/NFI_DNA-bd_CS.
IPR019548. CTF/NFI_DNA-bd_N.
IPR003619. MAD_homology1_Dwarfin-type.
[Graphical view ]
PANTHERi PTHR11492. PTHR11492. 1 hit.
Pfami PF03165. MH1. 1 hit.
PF10524. NfI_DNAbd_pre-N. 1 hit.
[Graphical view ]
SMARTi SM00523. DWA. 1 hit.
[Graphical view ]
PROSITEi PS00349. CTF_NFI_1. 1 hit.
PS51080. CTF_NFI_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Identification of NFI-binding sites and cloning of NFI-cDNAs suggest a regulatory role for NFI transcription factors in olfactory neuron gene expression."
    Baumeister H., Gronostajski R.M., Lyons G.E., Margolis F.L.
    Brain Res. Mol. Brain Res. 72:65-79(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Olfactory epitheliumImported.

Entry informationi

Entry nameiQ9QY87_RAT
AccessioniPrimary (citable) accession number: Q9QY87
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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