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Protein

Nephrocystin-1

Gene

Nphp1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Together with BCAR1 it may play a role in the control of epithelial cell polarity. Involved in the organization of apical junctions in kidney cells, together with NPHP4 and RPGRIP1L/NPHP8. Does not seem to be strictly required for ciliogenesis. Seems to help to recruit PTK2B/PYK2 to cell matrix adhesions, thereby initiating phosphorylation of PTK2B/PYK2 and PTK2B/PYK2-dependent signaling. May play a role in the regulation of intraflagellar transport (IFT) during cilia assembly. Required for normal retina development. In connecting photoreceptor cilia influences the movement of some IFT proteins such as IFT88 and WDR19. Involved in spermatogenesis; required for the differentiation of early elongating spermatids into spermatozoa.3 Publications

GO - Biological processi

  • cell projection organization Source: UniProtKB
  • cellular protein localization Source: UniProtKB
  • photoreceptor cell outer segment organization Source: UniProtKB
  • retina development in camera-type eye Source: UniProtKB
  • spermatid differentiation Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Cilium biogenesis/degradation, Differentiation, Spermatogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Nephrocystin-1
Gene namesi
Name:Nphp1
Synonyms:Nph1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

Organism-specific databases

MGIiMGI:1858233. Nphp1.

Subcellular locationi

GO - Cellular componenti

  • adherens junction Source: UniProtKB-SubCell
  • bicellular tight junction Source: UniProtKB-SubCell
  • cell-cell junction Source: UniProtKB
  • ciliary base Source: MGI
  • ciliary transition zone Source: CACAO
  • cytoplasm Source: CACAO
  • cytoskeleton Source: UniProtKB-KW
  • motile cilium Source: UniProtKB
  • photoreceptor connecting cilium Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell projection, Cilium, Cytoplasm, Cytoskeleton, Tight junction

Pathology & Biotechi

Disruption phenotypei

Mice are viable without renal manifestations of nephronophthisis. Male mice are infertile with oligoteratozoospermia. Spermatogenesis is blocked at the early stages of spermatid elongation, with degenerating spermatids sloughing off into the lumen. Early elongating spermatids are detached from Sertoli cells and show a failure of sperm head and tail morphogenesis and an abnormal F-actin distribution. Severe retinal degradation with mislocalized rhodopsin, disorganized outer segments, restricted expression of transducin to the inner segment and abnormal intraflagellar transport (IFT) of IFT57.2 Publications

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 687687Nephrocystin-1PRO_0000159586Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei46 – 461Phosphotyrosine; by FAK2By similarity
Modified residuei304 – 3041Phosphotyrosine; by FAK2By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9QY53.
PaxDbiQ9QY53.
PRIDEiQ9QY53.

PTM databases

iPTMnetiQ9QY53.
PhosphoSiteiQ9QY53.

Expressioni

Tissue specificityi

Widespread expression, with highest levels in testis, in cell stages of the first meiotic division and thereafter. Weaker expression in skeletal muscle, kidney, thyroid, ovary, lung, prostate, thymus, uterus, heart and liver. Lowest levels in brain and spleen.

Developmental stagei

Widespread and uniform expression in whole embryo at all development stages.

Gene expression databases

BgeeiENSMUSG00000027378.
CleanExiMM_NPHP1.

Interactioni

Subunit structurei

Interacts with INVS and NPHP3 (By similarity). Interacts with Crk-associated substrate BCAR1, NPHP4, PTK2B/PYK2 and tensin. Interacts with AHI1 and TNK2 (By similarity). Interacts with NPHP4 in a complex containing NPHP1, NPHP4 and RPGRIP1L/NPHP8 (By similarity). Interacts with IQCB1; the interaction likely requires additional interactors (By similarity). Interacts (via SH3 domain) with PKD1. Interacts with KIF7 (By similarity). Interacts with ANKS3 (PubMed:25671767).By similarity1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
Bcar1Q611402EBI-77230,EBI-77088
Nphp4P592408EBI-77230,EBI-4281265

Protein-protein interaction databases

BioGridi207511. 56 interactions.
IntActiQ9QY53. 43 interactions.
STRINGi10090.ENSMUSP00000028857.

Structurei

3D structure databases

ProteinModelPortaliQ9QY53.
SMRiQ9QY53. Positions 159-254.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini155 – 21561SH3PROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili10 – 3021Sequence analysisAdd
BLAST
Coiled coili40 – 10667Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi116 – 14530Glu-richAdd
BLAST
Compositional biasi215 – 23622Glu-richAdd
BLAST

Domaini

The SH3 domain mediates the stable interaction with Cas and is involved in establishing tight junctions in epithelial cells.1 Publication

Sequence similaritiesi

Belongs to the nephrocystin-1 family.Curated
Contains 1 SH3 domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, SH3 domain

Phylogenomic databases

eggNOGiENOG410IE0Z. Eukaryota.
ENOG410XPXZ. LUCA.
HOVERGENiHBG019088.
InParanoidiQ9QY53.
KOiK19657.

Family and domain databases

InterProiIPR030642. NPHP1.
IPR001452. SH3_domain.
[Graphical view]
PANTHERiPTHR15176:SF1. PTHR15176:SF1. 1 hit.
PfamiPF00018. SH3_1. 1 hit.
[Graphical view]
PRINTSiPR00452. SH3DOMAIN.
SMARTiSM00326. SH3. 1 hit.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 1 hit.
PROSITEiPS50002. SH3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9QY53-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLARRPRDPL QALRRRGQEL KLQVDSLVTE SQLTGALEPS KRREIYQRCI
60 70 80 90 100
QLKQAVDENK NTLQKLNKAD EAAPVGNYEQ RKEEEHSLLE KLACQLQELA
110 120 130 140 150
VSISRKDALK VEAHSDKEED DTTEDDEEET GGEEEESEGD GEGKQEQASP
160 170 180 190 200
KQAETETVTY IALGDFAAQQ TGDLTFKKGD VLHIIEKKPD GWWLAKDAEG
210 220 230 240 250
VEGLIPRTYL EPYNKEDKLE SSEGSEEGGE EDGEEDVEVV DETADGAQVK
260 270 280 290 300
QRTDSHWSAV RKAISEQINT VDVLATMGAI PAGFRPSTLS QLLDEAGNQF
310 320 330 340 350
RASYFLQPEL TTSQLAFRDL TWDAKAGTIM SRPSRVSLIL TLWSCKMIPL
360 370 380 390 400
PGTSIQVLSR HIRLCLFDGS KVLSNIHTVR AVWQPKKPKT WTFSPQVTGI
410 420 430 440 450
LPCLLDGDCF IRSNSSTPDL GILFELGISY IRNSTGERGE LSCGWVFLKL
460 470 480 490 500
FDASGVPIPA KTYELFLNGG TPYEKGVEVD PSVSRRAQGS VFRQMISVRR
510 520 530 540 550
QPQLLVKLRS LNRRSRAMLS LLPETLVGSM CSAHLLIFYR QILGDVLLRD
560 570 580 590 600
RTNLQSADLI SHPVLATFPL LLEQPDVMDA LRSSWSEKES TLKRAEKRDK
610 620 630 640 650
ELLKAEFLLV YHDCVLPLLH STLLPPFRWA EEETEAARWK AIADFLKQSR
660 670 680
ENEGSLKALL SPDGVHKPFD LSEQTFDFLG EIRKNSG
Length:687
Mass (Da):77,035
Last modified:May 1, 2000 - v1
Checksum:iFAA10B044F5CE678
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti46 – 461Y → C in CAB45687 (Ref. 3) Curated
Sequence conflicti90 – 901E → G in CAB45687 (Ref. 3) Curated
Sequence conflicti210 – 2101L → W in CAB45687 (Ref. 3) Curated
Sequence conflicti236 – 2361D → DGEED (PubMed:10739664).Curated
Sequence conflicti296 – 2961Missing in CAB45687 (Ref. 3) Curated
Sequence conflicti360 – 3601R → K in CAB45687 (Ref. 3) Curated
Sequence conflicti477 – 4771V → A in CAB45687 (Ref. 3) Curated
Sequence conflicti549 – 5491R → K in CAB45687 (Ref. 3) Curated
Sequence conflicti569 – 58214PLLLE…MDALR → MNGALCCPLSLQEK (PubMed:16141072).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF127180 mRNA. Translation: AAF22134.1.
AF176210 mRNA. Translation: AAD54311.1.
AJ243223 mRNA. Translation: CAB45687.1.
AK009252 mRNA. No translation available.
RefSeqiNP_058598.1. NM_016902.4.
UniGeneiMm.210766.

Genome annotation databases

GeneIDi53885.
KEGGimmu:53885.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF127180 mRNA. Translation: AAF22134.1.
AF176210 mRNA. Translation: AAD54311.1.
AJ243223 mRNA. Translation: CAB45687.1.
AK009252 mRNA. No translation available.
RefSeqiNP_058598.1. NM_016902.4.
UniGeneiMm.210766.

3D structure databases

ProteinModelPortaliQ9QY53.
SMRiQ9QY53. Positions 159-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi207511. 56 interactions.
IntActiQ9QY53. 43 interactions.
STRINGi10090.ENSMUSP00000028857.

PTM databases

iPTMnetiQ9QY53.
PhosphoSiteiQ9QY53.

Proteomic databases

MaxQBiQ9QY53.
PaxDbiQ9QY53.
PRIDEiQ9QY53.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi53885.
KEGGimmu:53885.

Organism-specific databases

CTDi4867.
MGIiMGI:1858233. Nphp1.

Phylogenomic databases

eggNOGiENOG410IE0Z. Eukaryota.
ENOG410XPXZ. LUCA.
HOVERGENiHBG019088.
InParanoidiQ9QY53.
KOiK19657.

Miscellaneous databases

PROiQ9QY53.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000027378.
CleanExiMM_NPHP1.

Family and domain databases

InterProiIPR030642. NPHP1.
IPR001452. SH3_domain.
[Graphical view]
PANTHERiPTHR15176:SF1. PTHR15176:SF1. 1 hit.
PfamiPF00018. SH3_1. 1 hit.
[Graphical view]
PRINTSiPR00452. SH3DOMAIN.
SMARTiSM00326. SH3. 1 hit.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 1 hit.
PROSITEiPS50002. SH3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNPHP1_MOUSE
AccessioniPrimary (citable) accession number: Q9QY53
Secondary accession number(s): Q9D7G8, Q9QZP0, Q9WUZ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.