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Q9QX38 (Q9QX38_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:Nrp1 RGD 621588
OrganismRattus norvegicus (Rat) EMBL AAC53345.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length921 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 2 F5/8 type C domains. RuleBase RU003308

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding1941Calcium By similarity PIRSR PIRSR036960-1
Metal binding2081Calcium By similarity PIRSR PIRSR036960-1
Metal binding2491Calcium By similarity PIRSR PIRSR036960-1

Amino acid modifications

Disulfide bond26 ↔ 53 By similarity PIRSR PIRSR036960-2
Disulfide bond81 ↔ 103 By similarity PIRSR PIRSR036960-2
Disulfide bond146 ↔ 172 By similarity PIRSR PIRSR036960-2
Disulfide bond205 ↔ 227 By similarity PIRSR PIRSR036960-2

Sequences

Sequence LengthMass (Da)Tools
Q9QX38 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 58B29A9AA4978971

FASTA921103,052
        10         20         30         40         50         60 
MERGLPLLCA TLALALALGA FRSDKCGGTI KIENPGYLTS PGYPHSYHPS EKCEWLIQAP 

        70         80         90        100        110        120 
EPYQRIMINF NPHFDLEDRD CKYDYVEVID GENEGGRLWG KFCGKIAPSP VVSSGPFLFI 

       130        140        150        160        170        180 
KFVSDYETHG AGFSIRYEIF KRGPECSQNY TAPTGVIKSP GFPEKYPNSL ECTYIIFAPK 

       190        200        210        220        230        240 
MSEIILEFES FDLEQDSNPP GGMFCRYDRL EIWDGFPEVG PHIGRYCGQK TPGRIRSSSG 

       250        260        270        280        290        300 
ILSMVFYTDS AIAKEGFSAN YSVLQSSISE DFKCMEALGM ESGEIHSDQI TASSQYGTNW 

       310        320        330        340        350        360 
SVERSRLNYP ENGWTPGEDS YREWIQVDLG LLRFVTAVGT QGAISKETKK KYYVKTYRVD 

       370        380        390        400        410        420 
ISSNGEDWIT LKEGNKAIIF QGNTNPTDVV FGVFPKPLIT RFVRIKPASW ETGISMRFEV 

       430        440        450        460        470        480 
YGCKITDYPC SGMLGMVSGL ISDSQITASN QGDRNWMPEN IRLVTSRTGW ALPPSPHPYI 

       490        500        510        520        530        540 
NEWLQVDLGD EKIVRGVIIQ GGKHRENKVF MRKFKIAYSN NGSDWKMIMD DSKRKAKSFE 

       550        560        570        580        590        600 
GNNNYDTPEL RAFTPLSTRF IRIYPERATH SGLGLRMELL GCEVEVPTAG PTTPNGNPVD 

       610        620        630        640        650        660 
ECDDDQANCH SGTGDDFQLT GGTTVLATEK PTIIDSTIQS EFPTYGFNCE FGWGSHKTFC 

       670        680        690        700        710        720 
HWEHDSHAQL RWRVLTSKTG PIQDHTGDGN FIYSQADENQ KGKVARLVSP VVYSQSSAHC 

       730        740        750        760        770        780 
MTFWYHMSGS HVGTLRVKLH YQKPEEYDQL VWMVVGHQGD HWKEGRVLLH KSLKLYQVIF 

       790        800        810        820        830        840 
EGEIGKGNLG GIAVDDISIN NHIPQEDCAK PTDLDKKNTE IKIDETGSTP GYEEGKGDKN 

       850        860        870        880        890        900 
ISRKPGNVLK TLDPILITII AMSALGVLLG AVCGVVLYCA CWHNGMSERN LSALENYNFE 

       910        920 
LVDGVKLKKD KLNPHSNYSE A 

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References

[1]"Neuropilin is a receptor for the axonal chemorepellent semaphorin III."
He Z., Tessier-Lavigne M.
Cell 90:739-751(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF018957 mRNA. Translation: AAC53345.1.
UniGeneRn.10815.
Rn.165344.

3D structure databases

ProteinModelPortalQ9QX38.
SMRQ9QX38. Positions 144-585.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ9QX38.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

RGD621588. Nrp1.

Phylogenomic databases

HOVERGENHBG000502.
InParanoidQ9QX38.

Gene expression databases

GenevestigatorQ9QX38.

Family and domain databases

Gene3D2.60.120.260. 2 hits.
2.60.120.290. 2 hits.
InterProIPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008985. ConA-like_lec_gl_sf.
IPR000859. CUB_dom.
IPR008979. Galactose-bd-like.
IPR000998. MAM_dom.
IPR014648. Neuropilin.
IPR022579. Neuropilin1_C.
IPR027146. NRP1.
[Graphical view]
PANTHERPTHR10127:SF84. PTHR10127:SF84. 1 hit.
PfamPF00431. CUB. 2 hits.
PF11980. DUF3481. 1 hit.
PF00754. F5_F8_type_C. 2 hits.
PF00629. MAM. 1 hit.
[Graphical view]
PIRSFPIRSF036960. Neuropilin. 1 hit.
PRINTSPR00020. MAMDOMAIN.
SMARTSM00042. CUB. 2 hits.
SM00231. FA58C. 2 hits.
SM00137. MAM. 1 hit.
[Graphical view]
SUPFAMSSF49785. SSF49785. 2 hits.
SSF49854. SSF49854. 2 hits.
SSF49899. SSF49899. 1 hit.
PROSITEPS01180. CUB. 2 hits.
PS01285. FA58C_1. 2 hits.
PS01286. FA58C_2. 2 hits.
PS50022. FA58C_3. 2 hits.
PS00740. MAM_1. 1 hit.
PS50060. MAM_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9QX38_RAT
AccessionPrimary (citable) accession number: Q9QX38
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: April 16, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)