##gff-version 3 Q9QL88 UniProtKB Initiator methionine 1 1 . . . Note=Removed%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Chain 2 2184 . . . ID=PRO_0000426341;Note=Genome polyprotein Q9QL88 UniProtKB Chain 2 850 . . . ID=PRO_0000426342;Note=P1 Q9QL88 UniProtKB Chain 2 330 . . . ID=PRO_0000426343;Note=Capsid protein VP0 Q9QL88 UniProtKB Chain 2 69 . . . ID=PRO_0000426344;Note=Capsid protein VP4 Q9QL88 UniProtKB Chain 70 330 . . . ID=PRO_0000426345;Note=Capsid protein VP2 Q9QL88 UniProtKB Chain 331 568 . . . ID=PRO_0000426346;Note=Capsid protein VP3 Q9QL88 UniProtKB Chain 569 850 . . . ID=PRO_0000426347;Note=Capsid protein VP1 Q9QL88 UniProtKB Chain 851 1428 . . . ID=PRO_0000426348;Note=P2 Q9QL88 UniProtKB Chain 851 1000 . . . ID=PRO_0000426349;Note=Protease 2A Q9QL88 UniProtKB Chain 1001 1099 . . . ID=PRO_0000039642;Note=Protein 2B Q9QL88 UniProtKB Chain 1100 1428 . . . ID=PRO_0000039643;Note=Protein 2C Q9QL88 UniProtKB Chain 1429 2184 . . . ID=PRO_0000426350;Note=P3 Q9QL88 UniProtKB Chain 1429 1539 . . . ID=PRO_0000426351;Note=Protein 3AB Q9QL88 UniProtKB Chain 1429 1517 . . . ID=PRO_0000039644;Note=Protein 3A Q9QL88 UniProtKB Chain 1518 1539 . . . ID=PRO_0000426352;Note=Viral protein genome-linked Q9QL88 UniProtKB Chain 1540 2184 . . . ID=PRO_0000426353;Note=Protein 3CD Q9QL88 UniProtKB Chain 1540 1722 . . . ID=PRO_0000426354;Note=Protease 3C Q9QL88 UniProtKB Chain 1723 2184 . . . ID=PRO_0000426355;Note=RNA-directed RNA polymerase Q9QL88 UniProtKB Topological domain 2 1494 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9QL88 UniProtKB Intramembrane 1495 1510 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9QL88 UniProtKB Topological domain 1511 2184 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9QL88 UniProtKB Domain 1204 1360 . . . Note=SF3 helicase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00551 Q9QL88 UniProtKB Domain 1540 1718 . . . Note=Peptidase C3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9QL88 UniProtKB Domain 1949 2065 . . . Note=RdRp catalytic;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00539 Q9QL88 UniProtKB Zinc finger 1368 1385 . . . Note=C4-type%3B degenerate;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9QL88 UniProtKB Region 566 582 . . . Note=Amphipathic alpha-helix;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9QL88 UniProtKB Region 1100 1238 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Region 1100 1172 . . . Note=Membrane-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Region 1121 1125 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Region 1412 1419 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Region 1423 1428 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Active site 871 871 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Active site 889 889 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Active site 960 960 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Active site 1579 1579 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9QL88 UniProtKB Active site 1610 1610 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9QL88 UniProtKB Active site 1686 1686 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9QL88 UniProtKB Binding site 906 906 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9QL88 UniProtKB Binding site 908 908 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9QL88 UniProtKB Binding site 966 966 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9QL88 UniProtKB Binding site 968 968 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9QL88 UniProtKB Binding site 1368 1368 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9QL88 UniProtKB Binding site 1380 1380 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9QL88 UniProtKB Binding site 1385 1385 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9QL88 UniProtKB Binding site 1955 1955 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Binding site 1955 1955 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Binding site 2051 2051 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Binding site 2051 2051 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Site 69 70 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Site 330 331 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 850 851 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 1000 1001 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 1099 1100 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 1124 1124 . . . Note=Involved in the interaction with host RTN3;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q66478 Q9QL88 UniProtKB Site 1428 1429 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 1517 1518 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 1539 1540 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Site 1722 1723 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9QL88 UniProtKB Modified residue 1520 1520 . . . Note=O-(5'-phospho-RNA)-tyrosine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Lipidation 2 2 . . . Note=N-myristoyl glycine%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9QL88 UniProtKB Sequence conflict 25 25 . . . Note=I->L;Ontology_term=ECO:0000305;evidence=ECO:0000305 Q9QL88 UniProtKB Sequence conflict 447 447 . . . Note=T->P;Ontology_term=ECO:0000305;evidence=ECO:0000305 Q9QL88 UniProtKB Sequence conflict 562 562 . . . Note=S->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 Q9QL88 UniProtKB Sequence conflict 654 654 . . . Note=T->K;Ontology_term=ECO:0000305;evidence=ECO:0000305 Q9QL88 UniProtKB Sequence conflict 986 986 . . . Note=D->N;Ontology_term=ECO:0000305;evidence=ECO:0000305 Q9QL88 UniProtKB Sequence conflict 1110 1110 . . . Note=M->V;Ontology_term=ECO:0000305;evidence=ECO:0000305 Q9QL88 UniProtKB Sequence conflict 2126 2126 . . . Note=W->R;Ontology_term=ECO:0000305;evidence=ECO:0000305