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Q9QL88

- POLG_CXB6S

UniProt

Q9QL88 - POLG_CXB6S

Protein

Genome polyprotein

Gene
N/A
Organism
Coxsackievirus B6 (strain Schmitt)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 118 (01 Oct 2014)
      Sequence version 4 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Capsid protein VP1: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome. Capsid protein VP1 mainly forms the vertices of the capsid. Capsid protein VP1 interacts with host CXADR to provide virion attachment to target host cells. This attachment induces virion internalization. Tyrosine kinases are probably involved in the entry process. After binding to its receptor, the capsid undergoes conformational changes. Capsid protein VP1 N-terminus (that contains an amphipathic alpha-helix) and capsid protein VP4 are externalized. Together, they shape a pore in the host membrane through which viral genome is translocated to host cell cytoplasm. After genome has been released, the channel shrinks By similarity.By similarity
    Capsid protein VP2: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome By similarity.By similarity
    Capsid protein VP3: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome By similarity.By similarity
    Capsid protein VP4: Lies on the inner surface of the capsid shell. After binding to the host receptor, the capsid undergoes conformational changes. Capsid protein VP4 is released, Capsid protein VP1 N-terminus is externalized, and together, they shape a pore in the host membrane through which the viral genome is translocated into the host cell cytoplasm. After genome has been released, the channel shrinks By similarity.By similarity
    Capsid protein VP0: Component of immature procapsids, which is cleaved into capsid proteins VP4 and VP2 after maturation. Allows the capsid to remain inactive before the maturation step By similarity.By similarity
    Protein 2A: Cysteine protease that cleaves viral polyprotein and specific host proteins. It is responsible for the cleavage between the P1 and P2 regions, first cleavage occurring in the polyprotein. Cleaves also the host translation initiation factor EIF4G1, in order to shut down the capped cellular mRNA translation. Inhibits the host nucleus-cytoplasm protein and RNA trafficking by cleaving host members of the nuclear pores By similarity.By similarity
    Protein 2B: Plays an essential role in the virus replication cycle by acting as a viroporin. Creates a pore in the host reticulum endoplasmic and as a consequence releases Ca2+ in the cytoplasm of infected cell. In turn, high levels of cyctoplasmic calcium may trigger membrane trafficking and transport of viral ER-associated proteins to viroplasms, sites of viral genome replication By similarity.By similarity
    Protein 2C: Induces and associates with structural rearrangements of intracellular membranes. Displays RNA-binding, nucleotide binding and NTPase activities. May play a role in virion morphogenesis and viral RNA encapsidation by interacting with the capsid protein VP3 By similarity.By similarity
    Protein 3AB: Localizes the viral replication complex to the surface of membranous vesicles. Together with protein 3CD binds the Cis-Active RNA Element (CRE) which is involved in RNA synthesis initiation. Acts as a cofactor to stimulate the activity of 3D polymerase, maybe through a nucleid acid chaperone activity By similarity.By similarity
    Protein 3A: Localizes the viral replication complex to the surface of membranous vesicles. It inhibits host cell endoplasmic reticulum-to-Golgi apparatus transport and causes the dissassembly of the Golgi complex, possibly through GBF1 interaction. This would result in depletion of MHC, trail receptors and IFN receptors at the host cell surface By similarity.By similarity
    Viral protein genome-linked: acts as a primer for viral RNA replication and remains covalently bound to viral genomic RNA. VPg is uridylylated prior to priming replication into VPg-pUpU. The oriI viral genomic sequence may act as a template for this. The VPg-pUpU is then used as primer on the genomic RNA poly(A) by the RNA-dependent RNA polymerase to replicate the viral genome. VPg may be removed in the cytoplasm by an unknown enzyme termed "unlinkase". VPg is not cleaved off virion genomes because replicated genomic RNA are encapsidated at the site of replication By similarity.By similarity
    Protein 3CD: Is involved in the viral replication complex and viral polypeptide maturation. It exhibits protease activity with a specificity and catalytic efficiency that is different from protease 3C. Protein 3CD lacks polymerase activity. The 3C domain in the context of protein 3CD may have an RNA binding activity By similarity.By similarity
    Protease 3C: cleaves host DDX58/RIG-I and thus contributes to the inhibition of type I interferon production. Cleaves also host PABPC1 By similarity.By similarity
    RNA-directed RNA polymerase: Replicates the viral genomic RNA on the surface of intracellular membranes. May form linear arrays of subunits that propagate along a strong head-to-tail interaction called interface-I. Covalently attaches UMP to a tyrosine of VPg, which is used to prime RNA synthesis. The positive stranded RNA genome is first replicated at virus induced membranous vesicles, creating a dsRNA genomic replication form. This dsRNA is then used as template to synthesize positive stranded RNA genomes. ss+RNA genomes are either translated, replicated or encapsidated By similarity.PROSITE-ProRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).PROSITE-ProRule annotation
    Selective cleavage of Tyr-|-Gly bond in the picornavirus polyprotein.
    Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
    NTP + H2O = NDP + phosphate.

    Enzyme regulationi

    RNA-directed RNA polymerase: replication or transcription is subject to high level of random mutations by the nucleotide analog ribavirin.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sitei69 – 702Cleavage; by autolysisSequence Analysis
    Sitei330 – 3312Cleavage; by Protease 3CSequence Analysis
    Active sitei871 – 8711For Protease 2A activityBy similarity
    Active sitei889 – 8891For Protease 2A activityBy similarity
    Active sitei960 – 9601For Protease 2A activityBy similarity
    Sitei1000 – 10012Cleavage; by Protease 3CSequence Analysis
    Sitei1428 – 14292Cleavage; by Protease 3CSequence Analysis
    Sitei1517 – 15182Cleavage; by Protease 3CSequence Analysis
    Sitei1539 – 15402Cleavage; by Protease 3CSequence Analysis
    Active sitei1579 – 15791For Protease 3C activitySequence Analysis
    Active sitei1610 – 16101For Protease 3C activitySequence Analysis
    Active sitei1686 – 16861For Protease 3C activityBy similarity
    Sitei1722 – 17232Cleavage; by Protease 3CSequence Analysis
    Active sitei2051 – 20511For RdRp activityBy similarity

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. cysteine-type endopeptidase activity Source: InterPro
    3. ion channel activity Source: UniProtKB-KW
    4. RNA binding Source: UniProtKB-KW
    5. RNA-directed RNA polymerase activity Source: UniProtKB-KW
    6. RNA helicase activity Source: InterPro
    7. structural molecule activity Source: InterPro

    GO - Biological processi

    1. DNA replication Source: UniProtKB-KW
    2. endocytosis involved in viral entry into host cell Source: UniProtKB-KW
    3. induction by virus of host autophagy Source: UniProtKB
    4. pore formation by virus in membrane of host cell Source: UniProtKB-KW
    5. pore-mediated entry of viral genome into host cell Source: UniProtKB-KW
    6. protein oligomerization Source: UniProtKB-KW
    7. RNA-protein covalent cross-linking Source: UniProtKB-KW
    8. suppression by virus of host gene expression Source: UniProtKB-KW
    9. suppression by virus of host mRNA export from nucleus Source: UniProtKB-KW
    10. suppression by virus of host RIG-I activity by RIG-I proteolysis Source: UniProtKB
    11. suppression by virus of host translation initiation factor activity Source: UniProtKB
    12. transcription, DNA-templated Source: InterPro
    13. viral RNA genome replication Source: InterPro
    14. virion attachment to host cell Source: UniProtKB-KW

    Keywords - Molecular functioni

    Helicase, Hydrolase, Ion channel, Nucleotidyltransferase, Protease, RNA-directed RNA polymerase, Thiol protease, Transferase, Viral ion channel

    Keywords - Biological processi

    Activation of host autophagy by virus, DNA replication, Eukaryotic host gene expression shutoff by virus, Eukaryotic host translation shutoff by virus, Host gene expression shutoff by virus, Host mRNA suppression by virus, Host-virus interaction, Inhibition of host innate immune response by virus, Inhibition of host mRNA nuclear export by virus, Inhibition of host RIG-I by virus, Inhibition of host RLR pathway by virus, Ion transport, Pore-mediated penetration of viral genome into host cell, Transport, Viral attachment to host cell, Viral immunoevasion, Viral penetration into host cytoplasm, Viral RNA replication, Virus endocytosis by host, Virus entry into host cell

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding, RNA-binding

    Protein family/group databases

    MEROPSiC03.011.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Genome polyprotein
    Cleaved into the following 17 chains:
    Alternative name(s):
    VP4-VP2
    Alternative name(s):
    P1A
    Virion protein 4
    Alternative name(s):
    P1B
    Virion protein 2
    Alternative name(s):
    P1C
    Virion protein 3
    Alternative name(s):
    P1D
    Virion protein 1
    Protease 2A (EC:3.4.22.29)
    Short name:
    P2A
    Alternative name(s):
    Picornain 2A
    Protein 2A
    Protein 2B
    Short name:
    P2B
    Protein 2C (EC:3.6.1.15)
    Short name:
    P2C
    Protein 3A
    Short name:
    P3A
    Alternative name(s):
    Protein 3B
    Short name:
    P3B
    Protease 3C (EC:3.4.22.28)
    Short name:
    P3C
    Alternative name(s):
    3D polymerase
    Short name:
    3Dpol
    Protein 3D
    Short name:
    3D
    OrganismiCoxsackievirus B6 (strain Schmitt)
    Taxonomic identifieri231474 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stagePicornaviralesPicornaviridaeEnterovirusEnterovirus B
    Virus hostiHomo sapiens (Human) [TaxID: 9606]
    ProteomesiUP000007762: Genome

    Subcellular locationi

    Chain Capsid protein VP0 : Virion By similarity. Host cytoplasm By similarity
    Chain Capsid protein VP2 : Virion By similarity. Host cytoplasm By similarity
    Chain Capsid protein VP3 : Virion By similarity. Host cytoplasm By similarity
    Chain Capsid protein VP1 : Virion By similarity. Host cytoplasm By similarity
    Chain Protein 2B : Host cytoplasmic vesicle membrane Curated; Peripheral membrane protein Curated; Cytoplasmic side Curated
    Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
    Chain Protein 2C : Host cytoplasmic vesicle membrane Curated; Peripheral membrane protein Curated; Cytoplasmic side Curated
    Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
    Chain Protein 3A : Host cytoplasmic vesicle membrane Curated; Peripheral membrane protein Curated; Cytoplasmic side Curated
    Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
    Chain Protein 3AB : Host cytoplasmic vesicle membrane Curated; Peripheral membrane protein Curated; Cytoplasmic side Curated
    Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
    Chain Protein 3CD : Host cytoplasmic vesicle membrane Curated; Peripheral membrane protein Curated; Cytoplasmic side Curated
    Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.
    Chain RNA-directed RNA polymerase : Host cytoplasmic vesicle membrane Curated; Peripheral membrane protein Curated; Cytoplasmic side Curated
    Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

    GO - Cellular componenti

    1. host cell cytoplasmic vesicle membrane Source: UniProtKB-SubCell
    2. integral to membrane of host cell Source: UniProtKB-KW
    3. membrane Source: UniProtKB-KW
    4. T=pseudo3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, Host cytoplasm, Host cytoplasmic vesicle, Host membrane, Membrane, T=pseudo3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed; by hostBy similarity
    Chaini2 – 21842183Genome polyproteinBy similarityPRO_0000426341Add
    BLAST
    Chaini2 – 847846P1By similarityPRO_0000426342Add
    BLAST
    Chaini2 – 330329Capsid protein VP0Sequence AnalysisPRO_0000426343Add
    BLAST
    Chaini2 – 6968Capsid protein VP4Sequence AnalysisPRO_0000426344Add
    BLAST
    Chaini70 – 330261Capsid protein VP2Sequence AnalysisPRO_0000426345Add
    BLAST
    Chaini331 – 566236Capsid protein VP3Sequence AnalysisPRO_0000426346Add
    BLAST
    Chaini566 – 847282Capsid protein VP1Sequence AnalysisPRO_0000426347Add
    BLAST
    Chaini848 – 1428581P2By similarityPRO_0000426348Add
    BLAST
    Chaini848 – 1000153Protease 2ASequence AnalysisPRO_0000426349Add
    BLAST
    Chaini1001 – 109999Protein 2BSequence AnalysisPRO_0000039642Add
    BLAST
    Chaini1100 – 1428329Protein 2CSequence AnalysisPRO_0000039643Add
    BLAST
    Chaini1429 – 2184756P3By similarityPRO_0000426350Add
    BLAST
    Chaini1429 – 1539111Protein 3ABSequence AnalysisPRO_0000426351Add
    BLAST
    Chaini1429 – 151789Protein 3ASequence AnalysisPRO_0000039644Add
    BLAST
    Chaini1518 – 153922Viral protein genome-linkedSequence AnalysisPRO_0000426352Add
    BLAST
    Chaini1540 – 2184645Protein 3CDSequence AnalysisPRO_0000426353Add
    BLAST
    Chaini1540 – 1721182Protease 3CSequence AnalysisPRO_0000426354Add
    BLAST
    Chaini1722 – 2184463RNA-directed RNA polymeraseBy similarityPRO_0000426355Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Lipidationi2 – 21N-myristoyl glycine; by hostBy similarity
    Modified residuei1520 – 15201O-(5'-phospho-RNA)-tyrosineBy similarity

    Post-translational modificationi

    Specific enzymatic cleavages in vivo by the viral proteases yield a variety of precursors and mature proteins. Polyprotein processing intermediates such as VP0 which is a VP4-VP2 precursor are produced. During virion maturation, non-infectious particles are rendered infectious following cleavage of VP0. This maturation cleavage is followed by a conformational change of the particle By similarity.By similarity
    VPg is uridylylated by the polymerase and is covalently linked to the 5'-end of genomic RNA. This uridylylated form acts as a nucleotide-peptide primer for the polymerase By similarity.By similarity
    Myristoylation of VP4 is required during RNA encapsidation and formation of the mature virus particle.By similarity
    Capsid protein VP0: Myristoylation is required for the formation of pentamers during virus assembly. Further assembly of 12 pentamers and a molecule of genomic RNA generates the provirion By similarity.By similarity
    Genome polyprotein: Specific enzymatic cleavages in vivo by the viral proteases yield processing intermediates and the mature proteins.By similarity
    Capsid protein VP0: During virion maturation, immature virions are rendered infectious following cleavage of VP0 into VP4 and VP2. This maturation seems to be an autocatalytic event triggered by the presence of RNA in the capsid and it is followed by a conformational change infectious virion By similarity.By similarity
    Viral protein genome-linked: VPg is uridylylated by the polymerase into VPg-pUpU. This acts as a nucleotide-peptide primer for the genomic RNA replication By similarity.By similarity

    Keywords - PTMi

    Covalent protein-RNA linkage, Lipoprotein, Myristate, Phosphoprotein

    Interactioni

    Subunit structurei

    Capsid protein VP1: Interacts with capsid protein VP0, and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid By similarity. Interact with host CXADR. Capsid protein VP0: interacts with capsid protein VP1 and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Capsid protein VP2: Interacts with capsid protein VP1 and capsid protein VP3 in the mature capsid By similarity. Capsid protein VP3: interacts with capsid protein VP0 and capsid protein VP1 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid By similarity. Capsid protein VP4: Interacts with capsid protein VP1 and capsid protein VP3 By similarity. Protein 2C: interacts with capsid protein VP3; this interaction may be important for virion morphogenesis By similarity. Protein 3AB: interacts with protein 3CD By similarity. Viral protein genome-linked: interacts with RNA-directed RNA polymerase By similarity. Protein 3CD: interacts with protein 3AB and with RNA-directed RNA polymerase. RNA-directed RNA polymerase: interacts with viral protein genome-linked and with protein 3CD By similarity.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ9QL88.
    SMRiQ9QL88. Positions 2-69, 77-568, 581-1000, 1540-2184.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini2 – 14941493CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini1511 – 2184674CytoplasmicSequence AnalysisAdd
    BLAST

    Intramembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Intramembranei1495 – 151016Sequence AnalysisAdd
    BLAST

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini1204 – 1360157SF3 helicasePROSITE-ProRule annotationAdd
    BLAST
    Domaini1540 – 1705166Peptidase C3Add
    BLAST
    Domaini1949 – 2065117RdRp catalyticPROSITE-ProRule annotationAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni566 – 58217Amphipatic alpha-helixSequence AnalysisAdd
    BLAST
    Regioni1429 – 145224DisorderedBy similarityAdd
    BLAST

    Sequence similaritiesi

    Belongs to the picornaviruses polyprotein family.Curated
    Contains 1 peptidase C3 domain.Curated
    Contains 1 RdRp catalytic domain.PROSITE-ProRule annotation
    Contains 1 SF3 helicase domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Family and domain databases

    Gene3Di2.60.120.20. 3 hits.
    4.10.80.10. 2 hits.
    InterProiIPR003593. AAA+_ATPase.
    IPR000605. Helicase_SF3_ssDNA/RNA_vir.
    IPR014759. Helicase_SF3_ssRNA_vir.
    IPR027417. P-loop_NTPase.
    IPR014838. P3A.
    IPR000081. Peptidase_C3.
    IPR000199. Peptidase_C3A/C3B_picornavir.
    IPR003138. Pico_P1A.
    IPR002527. Pico_P2B.
    IPR001676. Picornavirus_capsid.
    IPR001205. RNA-dir_pol_C.
    IPR007094. RNA-dir_pol_PSvirus.
    IPR009003. Trypsin-like_Pept_dom.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF08727. P3A. 1 hit.
    PF00548. Peptidase_C3. 1 hit.
    PF02226. Pico_P1A. 1 hit.
    PF00947. Pico_P2A. 1 hit.
    PF01552. Pico_P2B. 1 hit.
    PF00680. RdRP_1. 1 hit.
    PF00073. Rhv. 3 hits.
    PF00910. RNA_helicase. 1 hit.
    [Graphical view]
    ProDomiPD001306. Peptidase_C3. 1 hit.
    PD649346. Pico_P2B. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00382. AAA. 1 hit.
    [Graphical view]
    SUPFAMiSSF50494. SSF50494. 2 hits.
    SSF52540. SSF52540. 1 hit.
    SSF89043. SSF89043. 1 hit.
    PROSITEiPS50507. RDRP_SSRNA_POS. 1 hit.
    PS51218. SF3_HELICASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9QL88-1 [UniParc]FASTAAdd to Basket

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    MGAQVSTQKT GAHETALNAQ GNSVIHYTNI NYYKDAASNS ANRQDFTQDP     50
    SKFTEPVKDV MIKSLPALNS PTVEECGYSD RVRSITLGNS TITTQECANV 100
    VVAYGVWPDY LHDDEATAED QPTQPDVATC RFYTLDSVSW QSSSAGWWWK 150
    FPDALSNMGL FGQNMQYHYL GRSGYTIHVQ CNASKFHQGC LLVVCVPEAE 200
    MGCSNLNNAP LAADLSAGEV ARQFTVEPAN GQNQVQTAVH NAAMGVAVGN 250
    LTIFPHQWIN LRTNNSATIV MPYINSVPMD NMFRHNNFTL MIIPFAKLAY 300
    SDGASTFVPI TVTIAPMNAE YNGLRLAGHQ GLPVMTTPGS TQFLTSDDFQ 350
    SPCAMPQFDV TPEMNIPGQV NNLMEIAEVD SVVPVNNTET NVNGMDAYRI 400
    PVQSNMDTGG QVFGFPLQPG ASSVFQRTLL GEILNYYTHW SGSIKLTFMF 450
    CGSAMATGKF LLAYSPPGAG APKSRKDAML GTHVIWDVGL QSSCVLCIPW 500
    ISQTHYRFVV ADEYTAGGFI TCWYQTNVIV PLGAQSNCSI LCFVSACNDF 550
    SVRMLRDTKF ISQTAFYQSP VEGAIERAIA RVADTMPSGP TNSEAVPALT 600
    AVETGHTSQV VPSDNMQTRH VKNYHSRSET SVENFLCRSA CVYFTTYKNQ 650
    TGATNRFASW VITTRQVAQL RRKLEMFTYL RFDIELTFVI TSAQDQSTIS 700
    QDAPVQTHQI MYVPPGGPVP TKVDDYAWQT STNPSVFWTE GNAPPRMSVP 750
    FMSIGNAYST FYDGWSDFSN KGIYGLNTLN NMGTLYIRHV NGPNPVPITS 800
    TVRIYFKPKH VKAWVPRPPR LCQYKTSRQV NFTVTGVTES RANITTMNTT 850
    GAFGQQSGAA YVGNYRVVNR HLATHADWQN CVWEDYNRDL LVSTTTAHGC 900
    DVIARCQCNT GVYFCASRNK HYPVTFEGPG LVEVQESEYY PKRYQSHVLL 950
    AAGFSEPGDC GGILRCEHGV IGLVTMGGEG VVGFADVRDL LWLEDDAMEQ 1000
    GVRDYVEQLG NAFGSGFTNQ ICEQVNLLKE SLVGQDSILE KSLKALVKII 1050
    SALVIVVRNH DDLITVTATL ALIGCTTSPW RWLKQKVSQY YGIPMAERQS 1100
    NGWLKKFTEM TNACKGMEWI AIKIQKFIEW LKARILPEVK EKHEFLNRLK 1150
    QLPLLESQIA TIEQSAPSQS DQEQLFSNVQ YFAHYCRKYA PLYAAEAKRV 1200
    FSLEKKMSNY IQFKSKCRIE PVCLLLHGSP GAGKSVATSL IGRSLAEKLN 1250
    SSVYSLPPDP DHFDGYKQQA VVIMDDLCQN PDGKDVSLFC QMVSSVDFVP 1300
    PMAALEEKGI LFTSPFVLAS TNAGSINAPT VSDSRALARR FHFDMNIEVI 1350
    SMYSQNGKIN MPMSVKTCDE ECCPVNFKKC CPLVCGKAIQ FIDRRTQVRY 1400
    SLDMLVTEMF REYNHRHSVG ATLEALFQGP PVYREIKISV APETPPPPAI 1450
    ADLLKSVDSE AVREYCKEKG WLVPEINSTL QIEKHVSRAF ICLQALTTFV 1500
    SVAGIIYIIY KLFAGFQGAY TGMPNQKPKV PTLRQAKVQG PAFEFAVAMM 1550
    KRNSSTVKTE YGEFTMLGVY DRWAVLPRHA KPGPTILMND QEVGVLDAKE 1600
    LVDKDGTNLE LTLLKLNRNE KFRDIRGFLA KEEVEVNEAV LAINTSKFPN 1650
    MYIPVGQVTD YGFLNLGGTP TKRMLMYNFP TRAGQCGGVL MSTGKVLGIH 1700
    VGGNGHQGFS AALLKHYFND EQGEIEFIES SKDAGFPIIN TPSKTKLEPS 1750
    VFHQVFEGNK EPAVLRNGDP RLKANFEEAI FSKYIGNVNT HVDEYMLEAV 1800
    DHYAGQLATL DINTEPMKLE DAVYGTEGLE ALDLTTSAGY PYVALGIKKR 1850
    DILSKKSKDL TKLKECMDKY GLNLPMVTYV KDELRSAEKV AKGKSRLIEA 1900
    SSLNDSVAMR QTFGNLYKTF HLNPGIVTGS AVGCDPDLFW SKIPVMLDGH 1950
    LIAFDYSGYD ASLSPVWFAC LKLLLEKLGY THKETNYIDY LCNSHHLYRD 2000
    KHYFVRGGMP SGCSGTSIFN SMINNIIIRT LMLKVYKGID LDQFRMIAYG 2050
    DDVIASYPWP IDASLLAEAG KGYGLIMTPA DKGECFNEVT WTNVTFLKRY 2100
    FRADEQYPFL VHPVMPMKDI HESIRWTKDP KNTQDHVRSL CLLAWHNGEH 2150
    EYEEFIRKVR SVPVGRCLTL PAFSTLRRKW LDSF 2184
    Length:2,184
    Mass (Da):243,256
    Last modified:January 23, 2007 - v4
    Checksum:iD739B8F9E9B033C8
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti25 – 251I → L in AAD02132. 1 PublicationCurated
    Sequence conflicti447 – 4471T → P in AAD02132. 1 PublicationCurated
    Sequence conflicti562 – 5621S → R in AAF21972. 1 PublicationCurated
    Sequence conflicti654 – 6541T → K in AAD02132. 1 PublicationCurated
    Sequence conflicti986 – 9861D → N in AAF12719. (PubMed:10500285)Curated
    Sequence conflicti1110 – 11101M → V in AAD02132. 1 PublicationCurated
    Sequence conflicti2126 – 21261W → R in AAD02132. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF105342 Genomic RNA. Translation: AAF12719.1.
    AF039205 Genomic RNA. Translation: AAD02132.1.
    AF114384 Genomic RNA. Translation: AAF21972.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF105342 Genomic RNA. Translation: AAF12719.1 .
    AF039205 Genomic RNA. Translation: AAD02132.1 .
    AF114384 Genomic RNA. Translation: AAF21972.1 .

    3D structure databases

    ProteinModelPortali Q9QL88.
    SMRi Q9QL88. Positions 2-69, 77-568, 581-1000, 1540-2184.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    MEROPSi C03.011.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 2.60.120.20. 3 hits.
    4.10.80.10. 2 hits.
    InterProi IPR003593. AAA+_ATPase.
    IPR000605. Helicase_SF3_ssDNA/RNA_vir.
    IPR014759. Helicase_SF3_ssRNA_vir.
    IPR027417. P-loop_NTPase.
    IPR014838. P3A.
    IPR000081. Peptidase_C3.
    IPR000199. Peptidase_C3A/C3B_picornavir.
    IPR003138. Pico_P1A.
    IPR002527. Pico_P2B.
    IPR001676. Picornavirus_capsid.
    IPR001205. RNA-dir_pol_C.
    IPR007094. RNA-dir_pol_PSvirus.
    IPR009003. Trypsin-like_Pept_dom.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF08727. P3A. 1 hit.
    PF00548. Peptidase_C3. 1 hit.
    PF02226. Pico_P1A. 1 hit.
    PF00947. Pico_P2A. 1 hit.
    PF01552. Pico_P2B. 1 hit.
    PF00680. RdRP_1. 1 hit.
    PF00073. Rhv. 3 hits.
    PF00910. RNA_helicase. 1 hit.
    [Graphical view ]
    ProDomi PD001306. Peptidase_C3. 1 hit.
    PD649346. Pico_P2B. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00382. AAA. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50494. SSF50494. 2 hits.
    SSF52540. SSF52540. 1 hit.
    SSF89043. SSF89043. 1 hit.
    PROSITEi PS50507. RDRP_SSRNA_POS. 1 hit.
    PS51218. SF3_HELICASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete consensus sequence of coxsackievirus B6 and generation of infectious clones by long RT-PCR."
      Martino T.A., Tellier R., Petric M., Irwin D.M., Afshar A., Liu P.P.
      Virus Res. 64:77-86(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. "Cloning and sequencing of an infectious cDNA of Coxsackievirus B6 (CVB6)."
      Zell R.H.
      Submitted (DEC-1997) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    3. "Strategy for sequence analysis of complete enterovirus genomes. The prototype strain of coxsackievirus B6."
      Lindberg A.M., Polacek C., Johansson S., Lundgren A., Andersson A., Van Ranst M.
      Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    4. "The coxsackie-adenovirus receptor (CAR) is used by reference strains and clinical isolates representing all six serotypes of coxsackievirus group B and by swine vesicular disease virus."
      Martino T.A., Petric M., Weingartl H., Bergelson J.M., Opavsky M.A., Richardson C.D., Modlin J.F., Finberg R.W., Kain K.C., Willis N., Gauntt C.J., Liu P.P.
      Virology 271:99-108(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH HOST CXADR.

    Entry informationi

    Entry nameiPOLG_CXB6S
    AccessioniPrimary (citable) accession number: Q9QL88
    Secondary accession number(s): Q9QAH1, Q9YXE3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 23, 2003
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 118 of the entry and version 4 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Peptidase families
      Classification of peptidase families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3