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Protein

Protein VP2

Gene

ORF2

Organism
Porcine enteric sapovirus (isolate Swine/United States/Cowden/1980) (Sw/SV/Cowden/1980/US)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be a minor structural protein present in one or two copies per virion. May play a role in RNA genome packaging (By similarity).By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene namesi
ORF Names:ORF2
OrganismiPorcine enteric sapovirus (isolate Swine/United States/Cowden/1980) (Sw/SV/Cowden/1980/US)
Taxonomic identifieri523795 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostiSus scrofa (Pig) [TaxID: 9823]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host cytoplasm, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 164164Protein VP2PRO_0000341651Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the sapovirus VP2 family.Curated

Family and domain databases

InterProiIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamiPF05752. Calici_MSP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9QEJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWIAGAMQG AGLLGDLAGT IGQIVLHNKQ LNIMNSFNQA QIQLAKDQLK
60 70 80 90 100
QNQQLANQYY EFNANLPVNQ YNSAVSAGFD SVSARQLAGS REVRYLGGQQ
110 120 130 140 150
TPLVHQGQIH QMMFSPKHLM QAQHVVGTFS RGMPGVTPSK GLPRPQGVTA
160
KVPVAGATTT HSKV
Length:164
Mass (Da):17,650
Last modified:May 1, 2000 - v1
Checksum:iDDE6FB048976769D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF182760 Genomic RNA. Translation: AAF04561.1.
RefSeqiNP_051036.1. NC_000940.1.

Genome annotation databases

GeneIDi1457801.
KEGGivg:1457801.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF182760 Genomic RNA. Translation: AAF04561.1.
RefSeqiNP_051036.1. NC_000940.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1457801.
KEGGivg:1457801.

Family and domain databases

InterProiIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamiPF05752. Calici_MSP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular characterization of a porcine enteric calicivirus genetically related to Sapporo-like human caliciviruses."
    Guo M., Chang K.O., Hardy M.E., Zhang Q., Parwani A.V., Saif L.J.
    J. Virol. 73:9625-9631(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiVP2_PESV
AccessioniPrimary (citable) accession number: Q9QEJ4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: May 1, 2000
Last modified: June 24, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic genomic RNA.

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.