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Q9QBU3

- CAPSD_POLVP

UniProt

Q9QBU3 - CAPSD_POLVP

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Protein

Capsid protein

Gene

ORF2

Organism
Pothos latent virus (isolate Pigeonpea/India) (PoLV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
p40
Gene namesi
ORF Names:ORF2
OrganismiPothos latent virus (isolate Pigeonpea/India) (PoLV)
Taxonomic identifieri652109 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeAureusvirus
Virus hostiCajanus cajan (Pigeon pea) (Cajanus indicus) [TaxID: 3821]
Pothos [TaxID: 174212]
ProteomesiUP000000572: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 372372Capsid proteinPRO_0000399482Add
BLAST

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

3D structure databases

ProteinModelPortaliQ9QBU3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9QBU3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MALVKRNNNM ALIATEAGKL AAVKAGQVML SPAGRELIWN GVNWVRRKLG
60 70 80 90 100
RSKKSDVILH PGVLPGAIAA PVANTRIIRA SKPKFTRSKG SVTIAHRELL
110 120 130 140 150
GQFNNSSGLV VNGGVSGNLY RINPSNPVVF PWLQGIAASF DQYKFDRVQL
160 170 180 190 200
QYVPMCATTE TGRVAIYFDK DQQDVEPADR VELANMGHWT ESAPWCESTL
210 220 230 240 250
NVPVDNVKRF MNDNTTTDRK LVDLGQIGLA TYGGGSTNPV GDLFIHYTIT
260 270 280 290 300
LFEPQPLASL VETEQSGAGA APFGTNLVTV SSNATTTIIT FRGPGVYLLA
310 320 330 340 350
LSQRAASFTT LVTAGGAVVN SHTTLFSGPA YQSIANITAT IPGGSITYNG
360 370
TLFGNYTLQV TRAKISNNAT LI
Length:372
Mass (Da):39,788
Last modified:May 1, 2000 - v1
Checksum:iFC21F6D73135F6B8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ243370 Genomic RNA. Translation: CAB59794.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ243370 Genomic RNA. Translation: CAB59794.1 .

3D structure databases

ProteinModelPortali Q9QBU3.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Characterization of a virus from pigeonpea with affinities to species in the genus Aureusvirus, family Tombusviridae."
    Lava Kumar P., Jones A.T., Sreenivasulu P., Fenton B., Reddy D.V.R.
    Plant Dis. 85:208-215(2001)
    [AGRICOLA] [Europe PMC]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_POLVP
AccessioniPrimary (citable) accession number: Q9QBU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: May 1, 2000
Last modified: October 1, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3