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Q9QBU3

- CAPSD_POLVP

UniProt

Q9QBU3 - CAPSD_POLVP

Protein

Capsid protein

Gene

ORF2

Organism
Pothos latent virus (isolate Pigeonpea/India) (PoLV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    p40
    Gene namesi
    ORF Names:ORF2
    OrganismiPothos latent virus (isolate Pigeonpea/India) (PoLV)
    Taxonomic identifieri652109 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeAureusvirus
    Virus hostiCajanus cajan (Pigeon pea) (Cajanus indicus) [TaxID: 3821]
    Pothos [TaxID: 174212]
    ProteomesiUP000000572: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 372372Capsid proteinPRO_0000399482Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliQ9QBU3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9QBU3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALVKRNNNM ALIATEAGKL AAVKAGQVML SPAGRELIWN GVNWVRRKLG    50
    RSKKSDVILH PGVLPGAIAA PVANTRIIRA SKPKFTRSKG SVTIAHRELL 100
    GQFNNSSGLV VNGGVSGNLY RINPSNPVVF PWLQGIAASF DQYKFDRVQL 150
    QYVPMCATTE TGRVAIYFDK DQQDVEPADR VELANMGHWT ESAPWCESTL 200
    NVPVDNVKRF MNDNTTTDRK LVDLGQIGLA TYGGGSTNPV GDLFIHYTIT 250
    LFEPQPLASL VETEQSGAGA APFGTNLVTV SSNATTTIIT FRGPGVYLLA 300
    LSQRAASFTT LVTAGGAVVN SHTTLFSGPA YQSIANITAT IPGGSITYNG 350
    TLFGNYTLQV TRAKISNNAT LI 372
    Length:372
    Mass (Da):39,788
    Last modified:May 1, 2000 - v1
    Checksum:iFC21F6D73135F6B8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ243370 Genomic RNA. Translation: CAB59794.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ243370 Genomic RNA. Translation: CAB59794.1 .

    3D structure databases

    ProteinModelPortali Q9QBU3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Characterization of a virus from pigeonpea with affinities to species in the genus Aureusvirus, family Tombusviridae."
      Lava Kumar P., Jones A.T., Sreenivasulu P., Fenton B., Reddy D.V.R.
      Plant Dis. 85:208-215(2001)
      [AGRICOLA] [Europe PMC]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_POLVP
    AccessioniPrimary (citable) accession number: Q9QBU3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 5, 2010
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3