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Q9QAZ8 (RDRP_SJNNV) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length983 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2 Potential.

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sequence similarities

Belongs to the nodaviridae RNA polymerase family.

Contains 1 RdRp catalytic domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 983983RNA-directed RNA polymerase
PRO_0000222450

Regions

Domain579 – 701123RdRp catalytic

Sequences

Sequence LengthMass (Da)Tools
Q9QAZ8 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: F76890AA597F8BE1

FASTA983110,630
        10         20         30         40         50         60 
MRRFEFELAR MSGAAFCVVT GYRLLTSKWL ADRVEDYRQR VIADRKQILR DAAVIRTSIQ 

        70         80         90        100        110        120 
KQMELVRISV RKGHSHQEAA TERNSATDTM IGVVEKCGYE PYIISPSPRE KEYHGSRQFY 

       130        140        150        160        170        180 
SLADFRQDYR RDEITDRHVI VMTDVDYYVD MHELVGLGVP ILLYTFQPST VSGEVKDGYF 

       190        200        210        220        230        240 
TITDDHVHYR VAGGKDVRHR IWNYNQDTMF VRSKPRGFWA SLKQILRDIT GITALCGYLY 

       250        260        270        280        290        300 
LKLGIAPFGD QVTLFTVDQF KMGEHRNIVS IVPFATCRSN LLKISEYGAE LDYMRYQQRN 

       310        320        330        340        350        360 
NNANFNAVTY ISQEGPLISL GLEGNFASVQ LPLQDFENIR TAYELSKNNN LSDTVRRSAR 

       370        380        390        400        410        420 
SCKEAAIIHK CLQAGCDLAS EVVHKPGELA RHYQALGDTY DIDPSEQGKC YAREYAPGPL 

       430        440        450        460        470        480 
TQTAVFPSES RSNELATIDG RIAGPQAKAK SREHITPKMH KVARDFVRHL VPTAGLGRPY 

       490        500        510        520        530        540 
PLTYVEEHQT KPLQRARNDA NRYHDEFTMI VKAFQKKEAY NAPNYPRNIS TVPHTQNVKL 

       550        560        570        580        590        600 
SSYTYAFKEA VLQHVPWYMP THTPAEIAEA VQSLAASSTE LVETDYSKFD GTFLRFMREN 

       610        620        630        640        650        660 
VEFAIYKRWV HLDHLTELST LLGNELQAPA VTRLGIKYDP DCSRLSGSAL TTDGNSIANA 

       670        680        690        700        710        720 
FVSYLAGRQA GMDDDEAWTW IGIVYGDDGL RSGNVSDALL SKTASSLGFD LKIVNRAPRG 

       730        740        750        760        770        780 
SPVTFLSRVY LDPWSSPASV QSPLRTLLKL HTTCDTQSDI EDVGWAKTQA YLVTDCLTPF 

       790        800        810        820        830        840 
IGHWCRAYQR NCTARVVQYA DYNDIPFWVK NEDHVGNSWP QSDSVDWNDV VANELGLTTA 

       850        860        870        880        890        900 
ELLKHLAALD AYTGPVSGLP RLTTSLDLEP KMPVALDGEV QAGPSQQPQT DKDGTSPTGD 

       910        920        930        940        950        960 
RSAPRRARTA LQDADGRACR SRRSDRSPGK RDANVRDKRQ RRSTTPPRSR PSVPGPSSSG 

       970        980 
RRTDGDRVRG GAARQRQRRR SPV 

« Hide

References

[1]"Sequence of the non-structural protein gene encoded by RNA1 of striped jack nervous necrosis virus."
Nagai T., Nishizawa T.
J. Gen. Virol. 80:3019-3022(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Establishment of an infectious RNA transcription system for striped jack nervous necrosis virus, the type species of the betanodaviruses."
Iwamoto T., Mise K., Mori K., Arimoto M., Nakai T., Okuno T.
J. Gen. Virol. 82:2653-2662(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB025018 Genomic RNA. Translation: BAA84210.1.
AB056571 Genomic RNA. Translation: BAB64329.1.
RefSeqNP_599247.1. NC_003448.1.

3D structure databases

ProteinModelPortalQ9QAZ8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID991144.

Family and domain databases

InterProIPR007094. RNA-dir_pol_PSvirus.
IPR001788. Tymovirus_RNA-dep_RNA_pol.
[Graphical view]
PfamPF00978. RdRP_2. 1 hit.
[Graphical view]
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRDRP_SJNNV
AccessionPrimary (citable) accession number: Q9QAZ8
Entry history
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: May 1, 2000
Last modified: April 16, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families