Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q9Q6X7

- CAPSD_CARMS

UniProt

Q9Q6X7 - CAPSD_CARMS

Protein

Capsid protein

Gene

ORF4

Organism
Carnation mottle virus (isolate China/Shanghai) (CarMV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins. Also acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs By similarity.By similarity

    Cofactori

    Binds calcium ions. Calcium probably promotes virus assembly and stabilizes the virus particle By similarity.By similarity

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    Calcium, RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    p38
    Gene namesi
    ORF Names:ORF4
    OrganismiCarnation mottle virus (isolate China/Shanghai) (CarMV)
    Taxonomic identifieri652111 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeCarmovirus
    Virus hostiDianthus barbatus [TaxID: 278075]
    Dianthus caryophyllus (Carnation) (Clove pink) [TaxID: 3570]
    Dianthus chinensis [TaxID: 118431]
    Dianthus superbus [TaxID: 288950]
    Saponaria officinalis (Common soapwort) (Lychnis saponaria) [TaxID: 3572]
    ProteomesiUP000006709: Genome

    Subcellular locationi

    Virion By similarity

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 348348Capsid proteinPRO_0000398301Add
    BLAST

    Interactioni

    Subunit structurei

    Homodimer. Homomultimer.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ9Q6X7.
    SMRiQ9Q6X7. Positions 81-348.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 8181R domain, disordered, interaction with RNAAdd
    BLAST
    Regioni82 – 239158S domain, virion shellAdd
    BLAST
    Regioni240 – 348109P domain, projectingAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR013669. Coat_prot_C_Carmovir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF08462. Carmo_coat_C. 1 hit.
    PF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9Q6X7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MENKGEKIAM NPTVQTLAQK GDKLAVKLVT RGWASLSTNQ KRRAEMLAGY    50
    TPAILAFTPR RPRMTNSPPR TSRNSPGQAG KSMTMSKTEL LCTVKGTTGV 100
    IPSFEDWVVS PRNVAVFPQL SLLATNFNKY RITALTVKYS PACSFETNGR 150
    VALGFNDDAS DTPPTTKVGF YDLGKHVETA AQTAKDLVIP VDGKTRFIRD 200
    SASDDAKLVD FGRLVLSTYG FDKADTVVGE LFIQYTIVLS DPTKTAKISQ 250
    ASNDKVSDGP TYVVPSVNGN ELQLRVVAAG KWCIIVRGTV EGGFTKPTLI 300
    GPGISGDVDY ESARPIAICE LVTQMEGQML KITKTSAEQP LKVVVYRM 348
    Length:348
    Mass (Da):37,738
    Last modified:May 1, 2000 - v1
    Checksum:iCF9860CD9D9A7815
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF192772 Genomic RNA. Translation: AAF15526.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF192772 Genomic RNA. Translation: AAF15526.1 .

    3D structure databases

    ProteinModelPortali Q9Q6X7.
    SMRi Q9Q6X7. Positions 81-348.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR013669. Coat_prot_C_Carmovir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF08462. Carmo_coat_C. 1 hit.
    PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Infectivity of full-length cDNA of carnation mottle virus."
      Zhang A.P., Yue Y., Ye R., Zhu H.Q., Xu L., Yu S.Q.
      Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_CARMS
    AccessioniPrimary (citable) accession number: Q9Q6X7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 5, 2010
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3