Q9Q1T6 (CAPSD_TOMK1) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Capsid protein

Alternative name(s):
Coat protein

Gene names

Name:

CP

Organism

Tomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1) [Complete proteome]

Taxonomic identifier

138311 [NCBI]

Taxonomic lineage

Viruses › ssRNA positive-strand viruses, no DNA stage › Virgaviridae › Tobamovirus

Virus host

Capsicum (peppers) [TaxID: 4071]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Petunia [TaxID: 4101]
Antirrhinum majus (Garden snapdragon) [TaxID: 4151]
Tagetes (marigolds) [TaxID: 13707]
Delphinium [TaxID: 46246]

Protein attributes

Sequence length	159 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
Subcellular location	Virion Potential.
Sequence similarities	Belongs to the virgaviridae capsid protein family.

Ontologies

Keywords
Cellular component	Virion
Molecular function	Capsid protein
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	viral capsid Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Initiator methionine	1	1	Removed; by host By similarity
	Chain	2 – 159	158	Capsid protein		PRO_0000144947
Experimental info
	Sequence conflict	115	1	V → L in AAD19282. Ref.2

Sequences

	Sequence		Length	Mass (Da)
	Q9Q1T6 [UniParc]. Last modified January 23, 2007. Version 3. Checksum: 26D1B755F9975548	FASTA	159	17,815
	10 20 30 40 50 60 MSYPITSPSQ FVFLSSVWAD PIELLNVCTN SLGNQFQTQQ ARTTVQQQFS EVWEPFPQST 70 80 90 100 110 120 VRFPGDVYKV YRYNAVLDPL ITALLGTFDT RNRIIEVENR QSPTTAETLD ATRRVDDATV 130 140 150 AIRSAINNLV NELVRGTGLY NQNTFESMSG LVWTSAPAS

References

[1]	"Biological properties and genome structure of the Kazakh isolate K1 of Tobacco Mosaic virus." Belenovich E.V., Novikov V.K., Zavriev S.K. Mol. Biol. (Mosk.) 34:172-176(2000) [PubMed: 10732356] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]	"Kazakh isolates of tomato mosaic virus: possible connections of point mutations in the coat protein gene with symptom formation." Belenovich E.V., Novikov V.K., Zavriev S.K. Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[3]	"Properties of envelope protein of the K1 Kazakh strain of tobacco mosaic virus." Novikov V.K., Dobrov E.N., Belenovich E.V., Zavriev S.K. Mol. Biol. (Mosk.) 34:326-331(2000) [PubMed: 10779962] [Abstract] Cited for: CHARACTERIZATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AJ243571 Genomic RNA. Translation: CAB62914.1. AF062519 Genomic RNA. Translation: AAD19282.1.
3D structure databases
ProteinModelPortal	Q9Q1T6.
SMR	Q9Q1T6. Positions 2-159.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR001337. TMV-like_coat. [Graphical view]
Pfam	PF00721. TMV_coat. 1 hit. [Graphical view]
SUPFAM	SSF47195. TMV_coat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

CAPSD_TOMK1

Accession

Primary (citable) accession number: Q9Q1T6
Secondary accession number(s): Q9YLQ8

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 1, 2000
Last sequence update:	January 23, 2007
Last modified:	May 31, 2011
This is version 43 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Viral Protein Annotation Program