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Protein

Capsid protein

Gene

CP

Organism
Tomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiTomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1)
Taxonomic identifieri138311 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiAntirrhinum majus (Garden snapdragon) [TaxID: 4151]
Capsicum (peppers) [TaxID: 4071]
Delphinium [TaxID: 46246]
Petunia [TaxID: 4101]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Tagetes (marigolds) [TaxID: 13707]
Proteomesi
  • UP000008252 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by hostBy similarity
ChainiPRO_00001449472 – 159Capsid proteinAdd BLAST158

Structurei

3D structure databases

ProteinModelPortaliQ9Q1T6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG0900011A.

Family and domain databases

Gene3Di1.20.120.70. 1 hit.
InterProiView protein in InterPro
IPR001337. TMV-like_coat.
IPR036417. TMV-like_coat_sf.
PfamiView protein in Pfam
PF00721. TMV_coat. 1 hit.
SUPFAMiSSF47195. SSF47195. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9Q1T6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYPITSPSQ FVFLSSVWAD PIELLNVCTN SLGNQFQTQQ ARTTVQQQFS
60 70 80 90 100
EVWEPFPQST VRFPGDVYKV YRYNAVLDPL ITALLGTFDT RNRIIEVENR
110 120 130 140 150
QSPTTAETLD ATRRVDDATV AIRSAINNLV NELVRGTGLY NQNTFESMSG

LVWTSAPAS
Length:159
Mass (Da):17,815
Last modified:January 23, 2007 - v3
Checksum:i26D1B755F9975548
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti115V → L in AAD19282 (Ref. 2) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ243571 Genomic RNA. Translation: CAB62914.1.
AF062519 Genomic RNA. Translation: AAD19282.1.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TOMK1
AccessioniPrimary (citable) accession number: Q9Q1T6
Secondary accession number(s): Q9YLQ8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 56 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families