Reviewed, UniProtKB/Swiss-Prot Q9PWD5 (HXA9_MORSA)

Names and origin

Protein names

Recommended name:
    Homeobox protein Hox-A9

Gene names

Name:

hoxa9

Organism

Morone saxatilis (Striped bass)

Taxonomic identifier

34816 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Euteleostei › Neoteleostei › Acanthomorpha › Acanthopterygii › Percomorpha › Perciformes › Percoidei › Moronidae › Morone

Protein attributes

Sequence length	269 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis By similarity.
Subcellular location	Nucleus By similarity.
Sequence similarities	Belongs to the Abd-B homeobox family. Contains 1 homeobox DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Gene Ontology (GO)
Biological process	multicellular organismal development Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro transcription Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription activator activity Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 269	269	Homeobox protein Hox-A9		PRO_0000200088
Regions
	DNA binding	202 – 261	60	Homeobox

Sequences

	Sequence		Length	Mass (Da)
	Q9PWD5-1 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 8D49DCE0597D2A4C	FASTA	269	29,600
	10 20 30 40 50 60 MSTSGTLTSY YVDSLILPES EELSVPRYPS GPGLQHARQS ASISDHSELG TCTFPSKPPV 70 80 90 100 110 120 FGPSWSHVPA QFPGTVSSVY HHHYGHPQGP VGADTDGRYQ SWLLEPMSGS LPMAGLPTTH 130 140 150 160 170 180 HYGIKPEGLG TRADGALPGS HTALLLSDYA NGTVATASPV EKDTLSGQAG DVSGEAEEKP 190 200 210 220 230 240 GLDPSKSLQN NPVSNWLHAS ATRKKRCPYT KHQILELEKE FLFNTYLTRD RRYEVARLLN 250 260 LTERQVKIWF QNRRMKMKKF NKDGAPKDE

References

[1]	"Genomic organization of the Hoxa4-Hoxa10 region from Morone saxatilis: implications for Hox gene evolution among vertebrates." Snell E.A., Scemama J.L., Stellwag E.J. J. Exp. Zool. 285:41-49(1999) [PubMed: 10327649] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	AF089743 Genomic DNA. Translation: AAD46396.1.
3D structure databases
SMR	Q9PWD5. Positions 190-265.
ModBase	Search...
Phylogenomic databases
HOVERGEN	Q9PWD5.
Family and domain databases
InterPro	IPR001356. Homeobox. IPR017970. Homeobox_CS. IPR017112. Homeobox_Hox9. IPR020479. Homeobox_region. IPR009057. Homeodomain-like. IPR012287. Homeodomain-rel. IPR006711. Hox9_act. [Graphical view]
Gene3D	G3DSA:1.10.10.60. Homeodomain-rel. 1 hit.
Pfam	PF00046. Homeobox. 1 hit. PF04617. Hox9_act. 1 hit. [Graphical view]
PIRSF	PIRSF037109. Homeobox_Hox9. 1 hit.
PRINTS	PR00024. HOMEOBOX.
SMART	SM00389. HOX. 1 hit. [Graphical view]
PROSITE	PS00027. HOMEOBOX_1. 1 hit. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

HXA9_MORSA

Accession

Primary (citable) accession number: Q9PWD5

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 11, 2001
Last sequence update:	May 1, 2000
Last modified:	November 24, 2009
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)