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Q9PVS4 (HXC4_ORYLA) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 90. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Protein attributes

Sequence length261 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis By similarity.

Subcellular location

Nucleus By similarity.

Sequence similarities

Belongs to the Antp homeobox family. Deformed subfamily.

Contains 1 homeobox DNA-binding domain.

Ontologies

Keywords
   Biological processTranscription
Transcription regulation
   Cellular componentNucleus
   DomainHomeobox
   LigandDNA-binding
   Molecular functionDevelopmental protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmulticellular organismal development

Inferred from electronic annotation. Source: UniProtKB-KW

transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionsequence-specific DNA binding

Inferred from electronic annotation. Source: InterPro

sequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 261261Homeobox protein Hox-C4
PRO_0000200168

Regions

DNA binding154 – 21360Homeobox
Motif133 – 1386Antp-type hexapeptide

Sequences

Sequence LengthMass (Da)Tools
Q9PVS4 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 01890A19997E2B94

FASTA26129,373
        10         20         30         40         50         60 
MIMSSYLMES NYIDPKFPPC EEYSQNNYIP DSPEYYSRAR DTGYQHHHQE LYPPRASYQE 

        70         80         90        100        110        120 
RQYNCASIPE PDTPRGHGIP HSAHLLAGKG QPASCETPQL SMSPATPPAA ASACNQATPE 

       130        140        150        160        170        180 
HPNSTASSKQ PVVYPWMKKI HVSTVNSGYN GTEPKRSRTA YTRQQVLELE KEFHYNRYLT 

       190        200        210        220        230        240 
RRRRIEIAHT LVLSERQIKI WFQNRRMKWK KDHRLPNTKV RSSSSGSNTS SAAGGVAAAS 

       250        260 
ATNSGPDELS GAQHGEDITR L 

« Hide

References

[1]"Hox genes of the medakafish Oryzias latipes."
Kondo S., Naruse K., Shima A.
Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB026955 mRNA. Translation: BAA86238.1.
RefSeqNP_001098348.1. NM_001104878.2.
UniGeneOla.24.

3D structure databases

ProteinModelPortalQ9PVS4.
SMRQ9PVS4. Positions 131-214.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSORLT00000009979; ENSORLP00000009978; ENSORLG00000007955.
GeneID100125418.
KEGGola:100125418.

Organism-specific databases

CTD30345.

Phylogenomic databases

eggNOGNOG314883.
GeneTreeENSGT00750000117269.
HOVERGENHBG016849.
InParanoidQ9PVS4.
KOK09304.
OMAERQYNCA.
OrthoDBEOG780RP4.
TreeFamTF352857.

Family and domain databases

Gene3D1.10.10.60. 1 hit.
InterProIPR017995. Homeobox_antennapedia.
IPR001827. Homeobox_Antennapedia_CS.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSPR00025. ANTENNAPEDIA.
PR00024. HOMEOBOX.
SMARTSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMSSF46689. SSF46689. 1 hit.
PROSITEPS00032. ANTENNAPEDIA. 1 hit.
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameHXC4_ORYLA
AccessionPrimary (citable) accession number: Q9PVS4
Entry history
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: May 1, 2000
Last modified: June 11, 2014
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Vertebrate homeotic Hox proteins

Nomenclature of vertebrate homeotic Hox proteins and list of entries