Q9PPP2 (RPOE_UREPA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable DNA-directed RNA polymerase subunit delta

Alternative name(s):
RNAP delta factor

Gene names

Name:	rpoE
Ordered Locus Names:	UU597

Organism

Ureaplasma parvum serovar 3 (strain ATCC 700970) [Complete proteome] [HAMAP]

Taxonomic identifier

273119 [NCBI]

Taxonomic lineage

Bacteria › Tenericutes › Mollicutes › Mycoplasmataceae › Ureaplasma

Protein attributes

Sequence length	160 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling By similarity. HAMAP MF_00357
Subunit structure	RNAP is composed of a core of 2 alpha, a beta and a beta' subunits. The core is associated with a delta subunit and one of several sigma factors By similarity.
Sequence similarities	Belongs to the rpoE family.

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase
Molecular function	Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 160	160	Probable DNA-directed RNA polymerase subunit delta HAMAP MF_00357		PRO_0000204335
Regions
	Compositional bias	99 – 160	62	Asp/Glu-rich (acidic) HAMAP MF_00357
	Compositional bias	151 – 160	10	Poly-Glu HAMAP MF_00357

Sequences

	Sequence		Length	Mass (Da)
	Q9PPP2 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 79B5FCDC7AB5A4CF	FASTA	160	18,770
	10 20 30 40 50 60 MSRQLVDIAY NAIKNNKIYN KKPFTFDDII NEIVKNSNVN LVEVNSQLGV LYTTLIQDTR 70 80 90 100 110 120 FISIGDLEWN LRERLSLDEI TKINNAMYEV GLYKDSDREE DEHEIVKNDK LTQSKEQEES 130 140 150 160 DEVSSLSDFV GYEDEDEEFK NNNTSNKDEI EDEEELEEEE

References

[1]	"The complete sequence of the mucosal pathogen Ureaplasma urealyticum." Glass J.I., Lefkowitz E.J., Glass J.S., Heiner C.R., Chen E.Y., Cassell G.H. Nature 407:757-762(2000) [PubMed: 11048724] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700970.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF222894 Genomic DNA. Translation: AAF31011.1.
RefSeq	NP_078436.1. NC_002162.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	876118.
GenomeReviews	Gene locus UU597 in contig AF222894_GR.
KEGG	uur:UU597.
PATRIC	20534831. VBIUrePar45146_0620.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG734591.
OMA	PEISNEG.
ProtClustDB	PRK02363.
Enzyme and pathway databases
BioCyc	UURE95667:UU597-MONOMER.
Family and domain databases
HAMAP	MF_00357. RNApol_bact_RpoE. [Tree]
InterPro	IPR007759. DNA-dir_RNA_pol_delta. [Graphical view]
KO	K03048.
Pfam	PF05066. RNA_pol_delta. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RPOE_UREPA

Accession

Primary (citable) accession number: Q9PPP2

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 4, 2001
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program