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Q9PNC0

- SYR_CAMJE

UniProt

Q9PNC0 - SYR_CAMJE

Protein

Arginine--tRNA ligase

Gene

argS

Organism
Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).UniRule annotation

    GO - Molecular functioni

    1. arginine-tRNA ligase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. arginyl-tRNA aminoacylation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciCJEJ192222:GJTS-1146-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Arginine--tRNA ligaseUniRule annotation (EC:6.1.1.19UniRule annotation)
    Alternative name(s):
    Arginyl-tRNA synthetaseUniRule annotation
    Short name:
    ArgRSUniRule annotation
    Gene namesi
    Name:argSUniRule annotation
    Ordered Locus Names:Cj1175c
    OrganismiCampylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
    Taxonomic identifieri192222 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesCampylobacteraceaeCampylobacter
    ProteomesiUP000000799: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 530530Arginine--tRNA ligasePRO_0000242001Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    IntActiQ9PNC0. 3 interactions.
    STRINGi192222.Cj1175c.

    Structurei

    Secondary structure

    1
    530
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi79 – 9113
    Helixi93 – 953
    Beta strandi105 – 1095
    Beta strandi115 – 1184
    Helixi121 – 1233
    Helixi124 – 13916
    Beta strandi143 – 1508
    Helixi154 – 17118
    Helixi187 – 20014
    Helixi202 – 2043
    Helixi207 – 2093
    Helixi210 – 23122
    Beta strandi239 – 2413
    Helixi242 – 2454
    Helixi249 – 25810
    Beta strandi262 – 2654
    Beta strandi268 – 2714
    Helixi273 – 2764
    Beta strandi282 – 2854
    Helixi293 – 30513
    Beta strandi310 – 3178
    Helixi318 – 3236
    Helixi324 – 3329
    Turni333 – 3353
    Helixi338 – 3403
    Beta strandi341 – 3466
    Beta strandi349 – 3535
    Helixi370 – 3778
    Helixi379 – 3857
    Beta strandi395 – 3984
    Helixi399 – 4035
    Helixi410 – 42718
    Turni432 – 4343
    Helixi445 – 45511
    Helixi457 – 46711
    Helixi472 – 49019
    Helixi499 – 51921

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3FNRX-ray2.20A77-530[»]
    ProteinModelPortaliQ9PNC0.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ9PNC0.

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi113 – 12311"HIGH" regionAdd
    BLAST

    Sequence similaritiesi

    Belongs to the class-I aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0018.
    HOGENOMiHOG000247214.
    KOiK01887.
    OMAiIRNTIND.
    OrthoDBiEOG6JB13C.

    Family and domain databases

    Gene3Di1.10.730.10. 1 hit.
    3.30.1360.70. 1 hit.
    3.40.50.620. 1 hit.
    HAMAPiMF_00123. Arg_tRNA_synth.
    InterProiIPR001412. aa-tRNA-synth_I_CS.
    IPR001278. Arg-tRNA-ligase.
    IPR005148. Arg-tRNA-synth_N.
    IPR008909. DALR_anticod-bd.
    IPR014729. Rossmann-like_a/b/a_fold.
    IPR009080. tRNAsynth_1a_anticodon-bd.
    [Graphical view]
    PANTHERiPTHR11956. PTHR11956. 1 hit.
    PfamiPF03485. Arg_tRNA_synt_N. 1 hit.
    PF05746. DALR_1. 1 hit.
    PF00750. tRNA-synt_1d. 1 hit.
    [Graphical view]
    PRINTSiPR01038. TRNASYNTHARG.
    SMARTiSM01016. Arg_tRNA_synt_N. 1 hit.
    SM00836. DALR_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF47323. SSF47323. 1 hit.
    SSF55190. SSF55190. 1 hit.
    TIGRFAMsiTIGR00456. argS. 1 hit.
    PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9PNC0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKSIIFNEIK KILECDFALE NPKDKNLAHF ATPLAFSLAK ELKKSPMLIA    50
    SDLASKFQNH DCFESVEAVN GYLNFRISKT FLNELANQAL TNPNDFTKGE 100
    KKQESFLLEY VSANPTGPLH IGHARGAVFG DTLTRLARHL GYKFNTEYYV 150
    NDAGNQIYLL GLSILLSVKE SILHENVEYP EQYYKGEYIV DLAKEAFEKF 200
    GKEFFSEENI PSLADWAKDK MLVLIKQNLE QAKIKIDSYV SERSYYDALN 250
    ATLESLKEHK GIYEQEGKIW LASSQKGDEK DRVIIREDGR GTYLAADIVY 300
    HKDKMSRGYG KCINIWGADH HGYIPRMKAA MEFLGFDSNN LEIILAQMVS 350
    LLKDGEPYKM SKRAGNFILM SDVVDEIGSD ALRYIFLSKK CDTHLEFDIS 400
    DLQKEDSSNP VYYINYAHAR IHQVFAKAGK KIDDVMKADL QSLNQDGVNL 450
    LFEALNLKAV LNDAFEARAL QKIPDYLKNL AANFHKFYNE NKVVGSANEN 500
    DLLKLFSLVA LSIKTAFSLM GIEAKNKMEH 530
    Length:530
    Mass (Da):60,190
    Last modified:October 1, 2000 - v1
    Checksum:iD2C9B35AF857B2B8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL111168 Genomic DNA. Translation: CAL35290.1.
    PIRiA81323.
    RefSeqiWP_010891916.1. NC_002163.1.
    YP_002344566.1. NC_002163.1.

    Genome annotation databases

    EnsemblBacteriaiCAL35290; CAL35290; Cj1175c.
    GeneIDi905465.
    KEGGicje:Cj1175c.
    PATRICi20059306. VBICamJej33762_1156.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL111168 Genomic DNA. Translation: CAL35290.1 .
    PIRi A81323.
    RefSeqi WP_010891916.1. NC_002163.1.
    YP_002344566.1. NC_002163.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3FNR X-ray 2.20 A 77-530 [» ]
    ProteinModelPortali Q9PNC0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q9PNC0. 3 interactions.
    STRINGi 192222.Cj1175c.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAL35290 ; CAL35290 ; Cj1175c .
    GeneIDi 905465.
    KEGGi cje:Cj1175c.
    PATRICi 20059306. VBICamJej33762_1156.

    Phylogenomic databases

    eggNOGi COG0018.
    HOGENOMi HOG000247214.
    KOi K01887.
    OMAi IRNTIND.
    OrthoDBi EOG6JB13C.

    Enzyme and pathway databases

    BioCyci CJEJ192222:GJTS-1146-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q9PNC0.

    Family and domain databases

    Gene3Di 1.10.730.10. 1 hit.
    3.30.1360.70. 1 hit.
    3.40.50.620. 1 hit.
    HAMAPi MF_00123. Arg_tRNA_synth.
    InterProi IPR001412. aa-tRNA-synth_I_CS.
    IPR001278. Arg-tRNA-ligase.
    IPR005148. Arg-tRNA-synth_N.
    IPR008909. DALR_anticod-bd.
    IPR014729. Rossmann-like_a/b/a_fold.
    IPR009080. tRNAsynth_1a_anticodon-bd.
    [Graphical view ]
    PANTHERi PTHR11956. PTHR11956. 1 hit.
    Pfami PF03485. Arg_tRNA_synt_N. 1 hit.
    PF05746. DALR_1. 1 hit.
    PF00750. tRNA-synt_1d. 1 hit.
    [Graphical view ]
    PRINTSi PR01038. TRNASYNTHARG.
    SMARTi SM01016. Arg_tRNA_synt_N. 1 hit.
    SM00836. DALR_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47323. SSF47323. 1 hit.
    SSF55190. SSF55190. 1 hit.
    TIGRFAMsi TIGR00456. argS. 1 hit.
    PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NCTC 11168.

    Entry informationi

    Entry nameiSYR_CAMJE
    AccessioniPrimary (citable) accession number: Q9PNC0
    Secondary accession number(s): Q0P981
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3