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Q9PH40 (Q9PH40_XYLFA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein EMBL AAF82919.1
Gene names
Ordered Locus Names:XF_0106
OrganismXylella fastidiosa [Complete proteome] [HAMAP]
Taxonomic identifier2371 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xylella

Protein attributes

Sequence length460 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcell adhesion

Inferred from electronic annotation. Source: InterPro

fucose metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionalpha-L-fucosidase activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9PH40 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: D5F82192135171D2

FASTA46051,324
        10         20         30         40         50         60 
MTQSSLFASL RVLIGFCLVA LICPAAIAQN VAAMKPSPQQ IAWQDLEFGV IVHFNPNTWL 

        70         80         90        100        110        120 
DQEWGDGSAS PKVFNPTHVD PGQWARAAKA AGAKYLILVA KHHDGFALWP TAQSEYSVKN 

       130        140        150        160        170        180 
SPWMGGKGDV VKLTAAAVRQ QGMGFGIYLS PWDRHEPKYA NVDAYNQFYA AQLVELASHY 

       190        200        210        220        230        240 
GPLTEWWLDG AGSAGHEYDF DKYLEQLRTY QPNTMVFADT ALFKYGDIRW VGNEAGVIEG 

       250        260        270        280        290        300 
ENWNVIDRHG DLRWRPVEVD TPLHRLEWFW HPNNERTLKS VDELLAIWEK SVGRGGQLVL 

       310        320        330        340        350        360 
GIAPDTRGLL PEADVKRLQA MGAAIQARYG AGKNLVPVHL KNHQAIVAAV DGDVDTFWSA 

       370        380        390        400        410        420 
PHGSHSAMLE LHFKQPITFD AALTMEWLND GQWVQKYAIE VWQKGKWVRV AQAQAIGKMK 

       430        440        450        460 
IDHFGSLTAS RVRLNILSSA DAAHIREFQL FNIGNSRAAH

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References

[1]"The genome sequence of the plant pathogen Xylella fastidiosa."
Simpson A.J.G., Reinach F.C., Arruda P., Abreu F.A., Acencio M., Alvarenga R., Alves L.M.C., Araya J.E., Baia G.S., Baptista C.S., Barros M.H., Bonaccorsi E.D., Bordin S., Bove J.M., Briones M.R.S., Bueno M.R.P., Camargo A.A., Camargo L.E.A. expand/collapse author list , Carraro D.M., Carrer H., Colauto N.B., Colombo C., Costa F.F., Costa M.C.R., Costa-Neto C.M., Coutinho L.L., Cristofani M., Dias-Neto E., Docena C., El-Dorry H., Facincani A.P., Ferreira A.J.S., Ferreira V.C.A., Ferro J.A., Fraga J.S., Franca S.C., Franco M.C., Frohme M., Furlan L.R., Garnier M., Goldman G.H., Goldman M.H.S., Gomes S.L., Gruber A., Ho P.L., Hoheisel J.D., Junqueira M.L., Kemper E.L., Kitajima J.P., Krieger J.E., Kuramae E.E., Laigret F., Lambais M.R., Leite L.C.C., Lemos E.G.M., Lemos M.V.F., Lopes S.A., Lopes C.R., Machado J.A., Machado M.A., Madeira A.M.B.N., Madeira H.M.F., Marino C.L., Marques M.V., Martins E.A.L., Martins E.M.F., Matsukuma A.Y., Menck C.F.M., Miracca E.C., Miyaki C.Y., Monteiro-Vitorello C.B., Moon D.H., Nagai M.A., Nascimento A.L.T.O., Netto L.E.S., Nhani A. Jr., Nobrega F.G., Nunes L.R., Oliveira M.A., de Oliveira M.C., de Oliveira R.C., Palmieri D.A., Paris A., Peixoto B.R., Pereira G.A.G., Pereira H.A. Jr., Pesquero J.B., Quaggio R.B., Roberto P.G., Rodrigues V., de Rosa A.J.M., de Rosa V.E. Jr., de Sa R.G., Santelli R.V., Sawasaki H.E., da Silva A.C.R., da Silva A.M., da Silva F.R., Silva W.A. Jr., da Silveira J.F., Silvestri M.L.Z., Siqueira W.J., de Souza A.A., de Souza A.P., Terenzi M.F., Truffi D., Tsai S.M., Tsuhako M.H., Vallada H., Van Sluys M.A., Verjovski-Almeida S., Vettore A.L., Zago M.A., Zatz M., Meidanis J., Setubal J.C.
Nature 406:151-159(2000) [PubMed: 10910347] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 9a5c.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE003849 Genomic DNA. Translation: AAF82919.1.
PIRG82847.
RefSeqNP_297399.1. NC_002488.3.

3D structure databases

ProteinModelPortalQ9PH40.
ModBaseSearch...

Protein family/group databases

CAZyGH29. Glycoside Hydrolase Family 29.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1125623.
GenomeReviewsGene locus XF_0106 in contig AE003849_GR.
KEGGxfa:XF0106.
NMPDRfig|160492.1.peg.106.
PATRIC24130104. VBIXylFas578_0109.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG697253.
OMAWIANENA.
ProtClustDBCLSK557105.

Enzyme and pathway databases

BioCycXFAS160492:XF0106-MONOMER.

Family and domain databases

InterProIPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008979. Galactose-bd-like.
IPR000933. Glyco_hydro_29.
IPR016286. Glyco_hydro_29_sub.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK01206.
PANTHERPTHR10030. Glyco_hydro_29. 1 hit.
PfamPF01120. Alpha_L_fucos. 1 hit.
PF00754. F5_F8_type_C. 1 hit.
[Graphical view]
PRINTSPR00741. GLHYDRLASE29.
SMARTSM00812. Alpha_L_fucos. 1 hit.
[Graphical view]
SUPFAMSSF49785. Gal_bind_like. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9PH40_XYLFA
AccessionPrimary (citable) accession number: Q9PH40
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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