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Q9PGP1 (Q9PGP1_XYLFA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
dTDP-4-dehydrorhamnose 3,5-epimerase EMBL AAF83070.1
Gene names
Ordered Locus Names:XF_0257
OrganismXylella fastidiosa [Complete proteome] [HAMAP]
Taxonomic identifier2371 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xylella

Protein attributes

Sequence length185 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processlipopolysaccharide biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular functiondTDP-4-dehydrorhamnose 3,5-epimerase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9PGP1 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 450B004ACCC1649D

FASTA18520,955
        10         20         30         40         50         60 
MKVIDTALPG CLVIEPRVFD DARGEFFEAW NAECFQRQGM SSRFVQSNVS ISMYGVLRGL 

        70         80         90        100        110        120 
HYQWPRPQGK LVGVLEGEVY DVAVDIRRGS PHYGRWVAVL LSAKNKRQLW IPEGFAHGFV 

       130        140        150        160        170        180 
VLSERAVFNY LCTDVYVKEA DAGIRWNDAL IGVDWPIAVP LLSAKDQKAP FMEEVPIDRL 


PIYVP

« Hide

References

[1]"The genome sequence of the plant pathogen Xylella fastidiosa."
Simpson A.J.G., Reinach F.C., Arruda P., Abreu F.A., Acencio M., Alvarenga R., Alves L.M.C., Araya J.E., Baia G.S., Baptista C.S., Barros M.H., Bonaccorsi E.D., Bordin S., Bove J.M., Briones M.R.S., Bueno M.R.P., Camargo A.A., Camargo L.E.A. expand/collapse author list , Carraro D.M., Carrer H., Colauto N.B., Colombo C., Costa F.F., Costa M.C.R., Costa-Neto C.M., Coutinho L.L., Cristofani M., Dias-Neto E., Docena C., El-Dorry H., Facincani A.P., Ferreira A.J.S., Ferreira V.C.A., Ferro J.A., Fraga J.S., Franca S.C., Franco M.C., Frohme M., Furlan L.R., Garnier M., Goldman G.H., Goldman M.H.S., Gomes S.L., Gruber A., Ho P.L., Hoheisel J.D., Junqueira M.L., Kemper E.L., Kitajima J.P., Krieger J.E., Kuramae E.E., Laigret F., Lambais M.R., Leite L.C.C., Lemos E.G.M., Lemos M.V.F., Lopes S.A., Lopes C.R., Machado J.A., Machado M.A., Madeira A.M.B.N., Madeira H.M.F., Marino C.L., Marques M.V., Martins E.A.L., Martins E.M.F., Matsukuma A.Y., Menck C.F.M., Miracca E.C., Miyaki C.Y., Monteiro-Vitorello C.B., Moon D.H., Nagai M.A., Nascimento A.L.T.O., Netto L.E.S., Nhani A. Jr., Nobrega F.G., Nunes L.R., Oliveira M.A., de Oliveira M.C., de Oliveira R.C., Palmieri D.A., Paris A., Peixoto B.R., Pereira G.A.G., Pereira H.A. Jr., Pesquero J.B., Quaggio R.B., Roberto P.G., Rodrigues V., de Rosa A.J.M., de Rosa V.E. Jr., de Sa R.G., Santelli R.V., Sawasaki H.E., da Silva A.C.R., da Silva A.M., da Silva F.R., Silva W.A. Jr., da Silveira J.F., Silvestri M.L.Z., Siqueira W.J., de Souza A.A., de Souza A.P., Terenzi M.F., Truffi D., Tsai S.M., Tsuhako M.H., Vallada H., Van Sluys M.A., Verjovski-Almeida S., Vettore A.L., Zago M.A., Zatz M., Meidanis J., Setubal J.C.
Nature 406:151-159(2000) [PubMed: 10910347] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 9a5c.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE003849 Genomic DNA. Translation: AAF83070.1.
PIRD82828.
RefSeqNP_297550.1. NC_002488.3.

3D structure databases

HSSPHSSP built from PDB template 1DZR based on UniProtKB P26394.
ProteinModelPortalQ9PGP1.
SMRQ9PGP1. Positions 1-175.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1125783.
GenomeReviewsGene locus XF_0257 in contig AE003849_GR.
KEGGxfa:XF0257.
NMPDRfig|160492.1.peg.257.
PATRIC24130445. VBIXylFas578_0271.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG730537.
OMAYQIRQPQ.
ProtClustDBCLSK445959.

Enzyme and pathway databases

BioCycXFAS160492:XF0257-MONOMER.

Family and domain databases

InterProIPR011051. Cupin_RmlC_type.
IPR000888. dTDP_sugar_isom.
IPR014710. RmlC-like_jellyroll.
[Graphical view]
Gene3DG3DSA:2.60.120.10. RmlC-like_jellyroll. 1 hit.
KOK01790.
PANTHERPTHR21047. dTDP_sugar_isom. 1 hit.
PfamPF00908. dTDP_sugar_isom. 1 hit.
[Graphical view]
ProDomPD001462. dTDP_sugar_isom. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF51182. RmlC_like_cupin. 1 hit.
TIGRFAMsTIGR01221. RmlC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9PGP1_XYLFA
AccessionPrimary (citable) accession number: Q9PGP1
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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