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Q9PF38 (Q9PF38_XYLFA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase RuleBase RU000675
EC=3.2.1.23 RuleBase RU000675
Gene names
Ordered Locus Names:XF_0840
OrganismXylella fastidiosa [Complete proteome] [HAMAP]
Taxonomic identifier2371 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xylella

Protein attributes

Sequence length612 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. RuleBase RU000675

Sequence similarities

Belongs to the glycosyl hydrolase 35 family. RuleBase RU003679

Ontologies

Keywords
   Molecular functionGlycosidase RuleBase RU000675
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionbeta-galactosidase activity

Inferred from electronic annotation. Source: EC

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9PF38 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: B894D6A3EB789BCB

FASTA61267,894
        10         20         30         40         50         60 
MLRHLLTLPL IFVIALPIGV NAAPWPAFST RGTQFIRDGR PYQLISGAIH FQRIPRAYWK 

        70         80         90        100        110        120 
DRLQKARAMG LNTVETYVFW NLVELREGQF DFTGNNDISA FVREAASQGL NVILRPGPYV 

       130        140        150        160        170        180 
CAEWEAGGFP AWLFADPTLR VRSQDPRFLD ASQRYLEALG TQVRPLLNGN GGPIIAVQVE 

       190        200        210        220        230        240 
NEYGSYGDDH GYLQAVRALF IKAGLGGALL FTADGAQMLG NGTLPDVLAA VNVAPGEAKQ 

       250        260        270        280        290        300 
ALDKLATFHP GQPQLVGEYW AGWFDQWGKP HAQTDAKQQA DEIEWMLRQG HSINLYMFVG 

       310        320        330        340        350        360 
GTSFGFMNGA NFQGGPSDHY SPQTTSYDYD AALDEAGRPM PKFVLFRDVI TRVTGLQPPP 

       370        380        390        400        410        420 
LPAATRFIDL PNTPLRASAS LWDNLPAAVA TTADPQPMER YGQAYGYILY RTTLHGPRKG 

       430        440        450        460        470        480 
TLYLGEVRDD ARVYVDRLFV GRAERRRQQV SVEVDIPSGA HRLDVLVENS GRVNYGPHLA 

       490        500        510        520        530        540 
DGRAGLIDPV MLNHERVNNW ETFLLPLQTP EAIHGWTTAP MQGPAFHRGT LLIRTPGDTF 

       550        560        570        580        590        600 
LDMAAFSKGV TWANGHLLGR YWDIGPQRAL YFPGAWQRQG ENTVLVFDVS DTAAAQVRGV 

       610 
QQQRWITPRT GK

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References

[1]"The genome sequence of the plant pathogen Xylella fastidiosa."
Simpson A.J.G., Reinach F.C., Arruda P., Abreu F.A., Acencio M., Alvarenga R., Alves L.M.C., Araya J.E., Baia G.S., Baptista C.S., Barros M.H., Bonaccorsi E.D., Bordin S., Bove J.M., Briones M.R.S., Bueno M.R.P., Camargo A.A., Camargo L.E.A. expand/collapse author list , Carraro D.M., Carrer H., Colauto N.B., Colombo C., Costa F.F., Costa M.C.R., Costa-Neto C.M., Coutinho L.L., Cristofani M., Dias-Neto E., Docena C., El-Dorry H., Facincani A.P., Ferreira A.J.S., Ferreira V.C.A., Ferro J.A., Fraga J.S., Franca S.C., Franco M.C., Frohme M., Furlan L.R., Garnier M., Goldman G.H., Goldman M.H.S., Gomes S.L., Gruber A., Ho P.L., Hoheisel J.D., Junqueira M.L., Kemper E.L., Kitajima J.P., Krieger J.E., Kuramae E.E., Laigret F., Lambais M.R., Leite L.C.C., Lemos E.G.M., Lemos M.V.F., Lopes S.A., Lopes C.R., Machado J.A., Machado M.A., Madeira A.M.B.N., Madeira H.M.F., Marino C.L., Marques M.V., Martins E.A.L., Martins E.M.F., Matsukuma A.Y., Menck C.F.M., Miracca E.C., Miyaki C.Y., Monteiro-Vitorello C.B., Moon D.H., Nagai M.A., Nascimento A.L.T.O., Netto L.E.S., Nhani A. Jr., Nobrega F.G., Nunes L.R., Oliveira M.A., de Oliveira M.C., de Oliveira R.C., Palmieri D.A., Paris A., Peixoto B.R., Pereira G.A.G., Pereira H.A. Jr., Pesquero J.B., Quaggio R.B., Roberto P.G., Rodrigues V., de Rosa A.J.M., de Rosa V.E. Jr., de Sa R.G., Santelli R.V., Sawasaki H.E., da Silva A.C.R., da Silva A.M., da Silva F.R., Silva W.A. Jr., da Silveira J.F., Silvestri M.L.Z., Siqueira W.J., de Souza A.A., de Souza A.P., Terenzi M.F., Truffi D., Tsai S.M., Tsuhako M.H., Vallada H., Van Sluys M.A., Verjovski-Almeida S., Vettore A.L., Zago M.A., Zatz M., Meidanis J., Setubal J.C.
Nature 406:151-159(2000) [PubMed: 10910347] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 9a5c.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE003849 Genomic DNA. Translation: AAF83650.1.
PIRE82756.
RefSeqNP_298130.1. NC_002488.3.

3D structure databases

ProteinModelPortalQ9PF38.
ModBaseSearch...

Protein family/group databases

CAZyGH35. Glycoside Hydrolase Family 35.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1126375.
GenomeReviewsGene locus XF_0840 in contig AE003849_GR.
KEGGxfa:XF0840.
NMPDRfig|160492.1.peg.837.
PATRIC24131689. VBIXylFas578_0884.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG292753.
OMAENMGRVS.
ProtClustDBCLSK881272.

Enzyme and pathway databases

BioCycXFAS160492:XF0840-MONOMER.

Family and domain databases

InterProIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK12308.
PANTHERPTHR23421. Glyco_hydro_35. 1 hit.
PfamPF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSPR00742. GLHYDRLASE35.
SUPFAMSSF49785. Gal_bind_like. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.
PROSITEPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9PF38_XYLFA
AccessionPrimary (citable) accession number: Q9PF38
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info