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Reviewed, UniProtKB/Swiss-Prot Q9PDF6 (PUR4_XYLFA)

Last modified November 3, 2009. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Phosphoribosylformylglycinamidine synthase
      Short name=FGAM synthase
      Short name=FGAMS
    EC=6.3.5.3
Alternative name(s):
    Formylglycinamide ribotide amidotransferase
      Short name=FGARAT
    Formylglycinamide ribotide synthetase
Gene names
Name: purL
Ordered Locus Names: XF_1423
OrganismXylella fastidiosa [Complete proteome] [HAMAP]
Taxonomic identifier2371 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella

Protein attributes

Sequence length1322 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Catalytic activity

ATP + N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide + L-glutamine + H2O = ADP + phosphate + 2-(formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + L-glutamate. HAMAP MF_00419

Pathway

Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2. HAMAP MF_00419

Subunit structure

Monomer By similarity.

Subcellular location

Cytoplasm By similarity.

Sequence similarities

In the N-terminal section; belongs to the FGAMS family.

Contains 1 glutamine amidotransferase type-1 domain.

Ontologies

Keywords
   Biological processPurine biosynthesis
   Cellular componentCytoplasm
   DomainGlutamine amidotransferase
   LigandATP-binding
Nucleotide-binding
   Molecular functionLigase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological process'de novo' IMP biosynthetic process

Inferred from electronic annotation. Source: InterPro

glutamine metabolic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionATP binding

Inferred from electronic annotation. Source: HAMAP

phosphoribosylformylglycinamidine synthase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 13221322Phosphoribosylformylglycinamidine synthase HAMAP MF_00419
PRO_0000100426

Regions

Domain1073 – 1322250Glutamine amidotransferase type-1
Nucleotide binding300 – 31112ATP Potential

Sites

Active site11661Nucleophile By similarity
Active site12871 By similarity
Active site12891 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q9PDF6-1 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: A066AC4E956BFA4C

FASTA1,322143,721
        10         20         30         40         50         60 
MIVLKGASAL SPFRLARFES RLQTTVPELH IVGAWHCYLI QIKSGHTLDM SALHRILQAE 

        70         80         90        100        110        120 
SVSEPPQEHV VSRYVMPRLG THSPWSSKTT ELLHGAGQPI ARIERGTRID LLGWSANAAT 

       130        140        150        160        170        180 
CPAIAKQLYD PMTQSLLESE DEVKTLFNVP EPLSLERIAL IDLEHANTRW GLALTADEID 

       190        200        210        220        230        240 
YLRTRYTELN RVPSDVELMM FAQANSEHCR HKIFNATWTI NDKEQQHSLF QMIKHTHQHT 

       250        260        270        280        290        300 
PQYTLSAYAD NAAVIEGHPT ARYRPDPITG EYRHEAVLPG AFQIKVETHN HPTAIAPFPG 

       310        320        330        340        350        360 
ASTGAGGEIR DEGATGRGGK PKAGLSGFSV SHLRIPTLPH PWETPRALNP RMASALDIML 

       370        380        390        400        410        420 
EGPLGSAAFN NEFGRPNLLG YFRSFELSAS KTLTRAYDKP IMLAGGLGAI DRIHIKKLRL 

       430        440        450        460        470        480 
QPGDVIIVLG GPAMLIGLGG GAASSVTSGT STEALDFASV QRDNPEMQRR CQEVIDHCVA 

       490        500        510        520        530        540 
LGTNNPIRSF HDVGAGGLSN AIPELLHDSE VGGVIDLAKI PSDDPSLSPL ELWCNESQER 

       550        560        570        580        590        600 
YVLGISAAHL QAFAAICTRE RCPFAAVGVA TATEQLIVGY GVTLPAALHV TEQQTPQRAN 

       610        620        630        640        650        660 
HTETSPTPNT LPPSVREAFA IDLPMDVLFG KAPKMHRNTA HPPPPHWPTL DSTQLDLHHA 

       670        680        690        700        710        720 
GLRVLAHPTV AAKNFLVTIG DRSIGGLTAR EQMIGPWQLP LADCAITLAG FGTYAGEAFA 

       730        740        750        760        770        780 
IGERAPLALL NSAAAARMAV GEAITNLCAA PVESLSMVKL SANWMAAAEH PGEDALLYDA 

       790        800        810        820        830        840 
VKAIGIELCP ALDISIPVGK DSLSMQSRWQ ADGATHTCIS PVSLVISAFT PVADARRQLT 

       850        860        870        880        890        900 
PLLHHQTNSE LWLIALDGGK QRLGGSVLAQ VHADSAALPT FGGECPDLDT PETLRAFFAL 

       910        920        930        940        950        960 
MNDARNAGLL LAYHDRSDGG AFAALCEMAF ASHLGLDITC DNRTEHLFPH LFNEELGAIV 

       970        980        990       1000       1010       1020 
QVADEHRTAF TDLVEQHGLT AYTQRIAHPT TAPSIRIMHN DQCLAQWTWE TLFDAWWSVT 

      1030       1040       1050       1060       1070       1080 
HAMQRLRDNP ECADEEREIA RTFTAPGLKP TLSFDPAVDV AMPFIATGIR PTVAILREQG 

      1090       1100       1110       1120       1130       1140 
INGHIEMALC FERAGFHCVD IHMNDLITGR VHLDEFVGLA ACGGFSYGDV LGAGRGWATS 

      1150       1160       1170       1180       1190       1200 
ILERTALRDQ FAAFFTRTDR FALGVCNGCQ MLSQLKSMIP GAEHWPRFVR NRSEQFEART 

      1210       1220       1230       1240       1250       1260 
ALLEVIQSPS IFLSGMAGSR LPVAVAHGEG YAMFDTPADQ AAAHVALRYI NGHGQAATHY 

      1270       1280       1290       1300       1310       1320 
PLNPNGSPNG ITGLTTTDGR ITILMPHPER TPRTINLSWS PNEWGEDTPW LRLFRNARAW 


VG 

« Hide

References

[1]"The genome sequence of the plant pathogen Xylella fastidiosa."
Simpson A.J.G., Reinach F.C., Arruda P., Abreu F.A., Acencio M., Alvarenga R., Alves L.M.C., Araya J.E., Baia G.S., Baptista C.S., Barros M.H., Bonaccorsi E.D., Bordin S., Bove J.M., Briones M.R.S., Bueno M.R.P., Camargo A.A., Camargo L.E.A. expand/collapse author list , Carraro D.M., Carrer H., Colauto N.B., Colombo C., Costa F.F., Costa M.C.R., Costa-Neto C.M., Coutinho L.L., Cristofani M., Dias-Neto E., Docena C., El-Dorry H., Facincani A.P., Ferreira A.J.S., Ferreira V.C.A., Ferro J.A., Fraga J.S., Franca S.C., Franco M.C., Frohme M., Furlan L.R., Garnier M., Goldman G.H., Goldman M.H.S., Gomes S.L., Gruber A., Ho P.L., Hoheisel J.D., Junqueira M.L., Kemper E.L., Kitajima J.P., Krieger J.E., Kuramae E.E., Laigret F., Lambais M.R., Leite L.C.C., Lemos E.G.M., Lemos M.V.F., Lopes S.A., Lopes C.R., Machado J.A., Machado M.A., Madeira A.M.B.N., Madeira H.M.F., Marino C.L., Marques M.V., Martins E.A.L., Martins E.M.F., Matsukuma A.Y., Menck C.F.M., Miracca E.C., Miyaki C.Y., Monteiro-Vitorello C.B., Moon D.H., Nagai M.A., Nascimento A.L.T.O., Netto L.E.S., Nhani A. Jr., Nobrega F.G., Nunes L.R., Oliveira M.A., de Oliveira M.C., de Oliveira R.C., Palmieri D.A., Paris A., Peixoto B.R., Pereira G.A.G., Pereira H.A. Jr., Pesquero J.B., Quaggio R.B., Roberto P.G., Rodrigues V., de Rosa A.J.M., de Rosa V.E. Jr., de Sa R.G., Santelli R.V., Sawasaki H.E., da Silva A.C.R., da Silva A.M., da Silva F.R., Silva W.A. Jr., da Silveira J.F., Silvestri M.L.Z., Siqueira W.J., de Souza A.A., de Souza A.P., Terenzi M.F., Truffi D., Tsai S.M., Tsuhako M.H., Vallada H., Van Sluys M.A., Verjovski-Almeida S., Vettore A.L., Zago M.A., Zatz M., Meidanis J., Setubal J.C.
Nature 406:151-159(2000) [PubMed: 10910347] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 9a5c.

Cross-references

Sequence databases

AE003849 Genomic DNA. Translation: AAF84232.1.
PIRD82685.
RefSeqNP_298712.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID1126969.
GenomeReviewsGene locus XF_1423 in contig AE003849_GR.
KEGGxfa:XF1423.
NMPDRfig|160492.1.peg.1419.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ9PDF6.
OMAERGIAYY.

Enzyme and pathway databases

BioCycXFAS160492:XF1423-MON.
BRENDA6.3.5.3. 278708.

Family and domain databases

HAMAPMF_00419.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR017926. GATASE_1.
IPR010073. PRibForGlyAmidine_synth.
[Graphical view]
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 2 hits.
[Graphical view]
TIGRFAMsTIGR01735. FGAM_synt. 1 hit.
PROSITEPS51273. GATASE_TYPE_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry namePUR4_XYLFA
AccessionPrimary (citable) accession number: Q9PDF6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 24, 2001
Last sequence update: October 1, 2000
Last modified: November 3, 2009
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents