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Protein

Putative Fis-like DNA-binding protein

Gene

XF_1998

Organism
Xylella fastidiosa (strain 9a5c)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi66 – 85H-T-H motifBy similarityAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative Fis-like DNA-binding protein
Gene namesi
Ordered Locus Names:XF_1998
OrganismiXylella fastidiosa (strain 9a5c)
Taxonomic identifieri160492 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
Proteomesi
  • UP000000812 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002039111 – 90Putative Fis-like DNA-binding proteinAdd BLAST90

Interactioni

Protein-protein interaction databases

STRINGi160492.XF1998.

Structurei

3D structure databases

ProteinModelPortaliQ9PBY7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105VY0. Bacteria.
COG2901. LUCA.
KOiK03557.
OMAiMSDNANL.
OrthoDBiPOG091H044N.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR005412. Fis_DNA-bd.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
[Graphical view]
PIRSFiPIRSF002097. DNA-binding_Fis. 1 hit.
PRINTSiPR01591. DNABINDNGFIS.
PR01590. HTHFIS.
SUPFAMiSSF46689. SSF46689. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9PBY7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNVVPSRPEV SRGSPKSPLR EHVAQVVRRY LRDLDGCDVN DLYNMVLHEM
60 70 80 90
EIPLLVEVLN HCEGNQSRAA ALLGIHRATL RKKLKEYGLV
Length:90
Mass (Da):10,216
Last modified:October 1, 2000 - v1
Checksum:i1C3A52FDD9802855
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003849 Genomic DNA. Translation: AAF84800.1.
PIRiH82611.

Genome annotation databases

EnsemblBacteriaiAAF84800; AAF84800; XF_1998.
KEGGixfa:XF_1998.
PATRICi24134221. VBIXylFas578_2133.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE003849 Genomic DNA. Translation: AAF84800.1.
PIRiH82611.

3D structure databases

ProteinModelPortaliQ9PBY7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi160492.XF1998.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF84800; AAF84800; XF_1998.
KEGGixfa:XF_1998.
PATRICi24134221. VBIXylFas578_2133.

Phylogenomic databases

eggNOGiENOG4105VY0. Bacteria.
COG2901. LUCA.
KOiK03557.
OMAiMSDNANL.
OrthoDBiPOG091H044N.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR005412. Fis_DNA-bd.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
[Graphical view]
PIRSFiPIRSF002097. DNA-binding_Fis. 1 hit.
PRINTSiPR01591. DNABINDNGFIS.
PR01590. HTHFIS.
SUPFAMiSSF46689. SSF46689. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiFISL_XYLFA
AccessioniPrimary (citable) accession number: Q9PBY7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: October 1, 2000
Last modified: September 7, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.