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Protein

GDT1-like protein C186.05c

Gene

SPAC186.05c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
GDT1-like protein C186.05c
Gene namesi
ORF Names:SPAC186.05c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC186.05c.
PomBaseiSPAC186.05c.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei31 – 5121HelicalSequence analysisAdd
BLAST
Transmembranei57 – 7721HelicalSequence analysisAdd
BLAST
Transmembranei83 – 10321HelicalSequence analysisAdd
BLAST
Transmembranei208 – 22821HelicalSequence analysisAdd
BLAST
Transmembranei242 – 26221HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 262262GDT1-like protein C186.05cPRO_0000316592Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi279030. 14 interactions.
MINTiMINT-4706026.

Family & Domainsi

Sequence similaritiesi

Belongs to the GDT1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000224541.
InParanoidiQ9P7Q0.
OMAiITHILGG.
OrthoDBiEOG783N5X.
PhylomeDBiQ9P7Q0.

Family and domain databases

InterProiIPR001727. UPF0016.
[Graphical view]
PANTHERiPTHR12608. PTHR12608. 1 hit.
PfamiPF01169. UPF0016. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9P7Q0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINVESPLNL ETTLGSLQFS HGSVQNIGMS ISMIIGCELG DKSFIVTALL
60 70 80 90 100
AYQYGRASVF FGSYLALFFM TSFAVLVGRA APFLFPKSIT HILGGTLFLI
110 120 130 140 150
FGVKMLKESK EVRESQQSLE NEFDKVEKII VNEEDMKKTL ELGLPASNRS
160 170 180 190 200
SSTLKDKFFK VFSMSCFKNL FSKKFSRAFI KAFALIFVSE LGDRSQIATI
210 220 230 240 250
VMSAKEKVLD VFIGVNIGHM LCTMVAVIVG RYISNKIEMY KVLFFGGIVF
260
MIFGILYIFQ GF
Length:262
Mass (Da):29,274
Last modified:October 1, 2000 - v1
Checksum:i6DAF6C4E987E56AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB75869.1.
PIRiT50132.
RefSeqiNP_595023.1. NM_001020453.2.

Genome annotation databases

EnsemblFungiiSPAC186.05c.1; SPAC186.05c.1:pep; SPAC186.05c.
GeneIDi2542574.
KEGGispo:SPAC186.05c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB75869.1.
PIRiT50132.
RefSeqiNP_595023.1. NM_001020453.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279030. 14 interactions.
MINTiMINT-4706026.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC186.05c.1; SPAC186.05c.1:pep; SPAC186.05c.
GeneIDi2542574.
KEGGispo:SPAC186.05c.

Organism-specific databases

EuPathDBiFungiDB:SPAC186.05c.
PomBaseiSPAC186.05c.

Phylogenomic databases

HOGENOMiHOG000224541.
InParanoidiQ9P7Q0.
OMAiITHILGG.
OrthoDBiEOG783N5X.
PhylomeDBiQ9P7Q0.

Miscellaneous databases

NextBioi20803625.
PROiQ9P7Q0.

Family and domain databases

InterProiIPR001727. UPF0016.
[Graphical view]
PANTHERiPTHR12608. PTHR12608. 1 hit.
PfamiPF01169. UPF0016. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYLY5_SCHPO
AccessioniPrimary (citable) accession number: Q9P7Q0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: October 1, 2000
Last modified: November 11, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.