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Protein

60S ribosomal protein L10-B

Gene

rpl1002

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Miscellaneous

There are two genes for L10 in S.pombe.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SPO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SPO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SPO-72689. Formation of a pool of free 40S subunits.
R-SPO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SPO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SPO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10-B
Gene namesi
Name:rpl1002
Synonyms:rpl10b
ORF Names:SPAP7G5.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAP7G5.05.
PomBaseiSPAP7G5.05. rpl1002.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: PomBase
  • cytosolic large ribosomal subunit Source: PomBase

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001471281 – 22160S ribosomal protein L10-BAdd BLAST221

Proteomic databases

MaxQBiQ9P769.
PRIDEiQ9P769.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (25S, 5.8S and 5S) (By similarity).By similarity

Protein-protein interaction databases

BioGridi278174. 19 interactors.
MINTiMINT-4704770.
STRINGi4896.SPAP7G5.05.1.

Structurei

3D structure databases

ProteinModelPortaliQ9P769.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000223754.
InParanoidiQ9P769.
KOiK02866.
OMAiGRRPACC.
OrthoDBiEOG092C4HB9.
PhylomeDBiQ9P769.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
InterProiView protein in InterPro
IPR001197. Ribosomal_L10e.
IPR016180. Ribosomal_L10e/L16.
IPR018255. Ribosomal_L10e_CS.
PANTHERiPTHR11726. PTHR11726. 1 hit.
PfamiView protein in Pfam
PF00252. Ribosomal_L16. 1 hit.
PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR00279. uL16_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS01257. RIBOSOMAL_L10E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9P769-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARRPARCYR YCKNKPYPKS RYNRAVPDSK IRIFDLGRKR AGVDEFPLCI
60 70 80 90 100
HLVSNEYEQI TSEALEAARI CANKYLVKIG GKDSFHLRVR AHPFHVVRIN
110 120 130 140 150
KMLSCAGADR LQTGMRHAFG KPNGLVARVN IGQVLMSVRT KDSSRATAIE
160 170 180 190 200
ALRRCQYKFP GQQRIIVSKK WGFSQYARDE YIEKRSRGEI IPDGCYAKFL
210 220
NKRGSLQEKL DLFPEASFNL A
Length:221
Mass (Da):25,359
Last modified:October 1, 2000 - v1
Checksum:i5F0A1BECDE05AE9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB88272.1.
RefSeqiNP_594315.1. NM_001019738.2.

Genome annotation databases

EnsemblFungiiSPAP7G5.05.1; SPAP7G5.05.1:pep; SPAP7G5.05.
GeneIDi2541678.
KEGGispo:SPAP7G5.05.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL10B_SCHPO
AccessioniPrimary (citable) accession number: Q9P769
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 26, 2001
Last sequence update: October 1, 2000
Last modified: July 5, 2017
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families