Reviewed,
UniProtKB/Swiss-Prot Q9P6Q1 (YKC9_SCHPO)
Last modified
November 24, 2009.
Version 40.
History...
Clusters with 100%,
90%,
50% identity |
Documents (3) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: UPF0001 protein C644.09 | ||
| Gene names |
| ||
| Organism | Schizosaccharomyces pombe (Fission yeast) [Complete proteome] | ||
| Taxonomic identifier | 4896 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces |
Protein attributes
| Sequence length | 237 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at transcript level. |
General annotation (Comments)
| Cofactor | Pyridoxal phosphate. |
| Subcellular location | |
| Sequence similarities | Belongs to the UPF0001 family. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Nucleus |
| Ligand | Pyridoxal phosphate |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Cellular component | cytosol Ref.2 Inferred from direct assay. Source: GeneDB_SPombe nucleus Ref.2Inferred from direct assay. Source: GeneDB_SPombe |
| Complete GO annotation... | |
Sequence annotation (Features)
Sequences
| ||||||||||||||||||
References
| [1] | "The genome sequence of Schizosaccharomyces pombe." Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. Nurse P.Nature 415:871-880(2002) [PubMed: 11859360] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 38366 / 972. |
| [2] | "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe." Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M. Nat. Biotechnol. 24:841-847(2006) [PubMed: 16823372] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. |
Cross-references
Sequence databases | |
|---|---|
| CU329670 Genomic DNA. Translation: CAB90136.1. | |
| RefSeq | NP_593877.1. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1B54 based on UniProtKB P38197. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q9P6Q1. |
Genome annotation databases | |
| GeneID | 2543658. |
| KEGG | spo:SPAC644.09. |
| NMPDR | fig|4896.1.peg.3847. |
Organism-specific databases | |
| GeneDB_Spombe | SPAC644.09. |
Phylogenomic databases | |
| OMA | HFALTAK |
| OrthoDB | EOG95TF4C |
Gene expression databases | |
| ArrayExpress | Q9P6Q1. |
Family and domain databases | |
| InterPro | IPR001608. Ala_racemase_N. IPR011078. Prd-pyrdxlP-dep_enz_YBL036C. [Graphical view] |
| PANTHER | PTHR10146. PP_YBL036C. 1 hit. |
| Pfam | PF01168. Ala_racemase_N. 1 hit. [Graphical view] |
| PIRSF | PIRSF004848. YBL036c_PLPDEIII. 1 hit. |
| TIGRFAMs | TIGR00044. PP_YBL036C. 1 hit. |
| PROSITE | PS01211. UPF0001. False negative. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | YKC9_SCHPO | ||||||||
| Accession | Primary (citable) accession number: Q9P6Q1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | FPAP (Fungal Proteome Annotation Project) | ||||||||
Relevant documents
| Schizosaccharomyces pombe Schizosaccharomyces pombe: entries and gene names |
| SIMILARITY comments Index of protein domains and families |
| Uncharacterized protein families (UPF) List of uncharacterized protein family (UPF) entries |

Clusters with


