Reviewed, UniProtKB/Swiss-Prot Q9P6Q1 (YKC9_SCHPO)

Names and origin

Protein names

Recommended name:
    UPF0001 protein C644.09

Gene names

ORF Names:

SPAC644.09

Organism

Schizosaccharomyces pombe (Fission yeast) [Complete proteome]

Taxonomic identifier

4896 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces

Protein attributes

Sequence length	237 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Cofactor	Pyridoxal phosphate.
Subcellular location	Cytoplasm. Nucleus.
Sequence similarities	Belongs to the UPF0001 family.

Ontologies

Keywords
Cellular component	Cytoplasm Nucleus
Ligand	Pyridoxal phosphate
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytosol Ref.2 Inferred from direct assay. Source: GeneDB_SPombe nucleus Ref.2 Inferred from direct assay. Source: GeneDB_SPombe
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 237	237	UPF0001 protein C644.09		PRO_0000316622
Amino acid modifications
	Modified residue	31	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q9P6Q1-1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 0E768E0E9A63ED2E	FASTA	237	26,393
	10 20 30 40 50 60 MSTIHSCLDL IRSQIQQSAN GRNVLLVAVS KFHPVETLME AYNAGQRHFG ENYMQEFLKK 70 80 90 100 110 120 VELMPDDVQW HFIGSLQSSK CKKIASVKNL YSIETIDTEK KARLVNSARE ALQLPLNVYI 130 140 150 160 170 180 QVNTSGEENK GGVTPSKVLE LCKQVQDMKY LRLKGLMTIG SISNSQLSDH NPDFQVLSDL 190 200 210 220 230 RESLQNELGI PLQLSMGMSS DYLLAIKYGS DSVRVGSSIF GSRPTEKPSD VHISASK

References

[1]

"The genome sequence of Schizosaccharomyces pombe." Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P. Nature 415:871-880(2002) [PubMed: 11859360] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 38366 / 972.

[2]

"ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe." Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M. Nat. Biotechnol. 24:841-847(2006) [PubMed: 16823372] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CU329670 Genomic DNA. Translation: CAB90136.1.
RefSeq	NP_593877.1.
3D structure databases
HSSP	HSSP built from PDB template 1B54 based on UniProtKB P38197.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9P6Q1.
Genome annotation databases
GeneID	2543658.
KEGG	spo:SPAC644.09.
NMPDR	fig|4896.1.peg.3847.
Organism-specific databases
GeneDB_Spombe	SPAC644.09.
Phylogenomic databases
OMA	HFALTAK
OrthoDB	EOG95TF4C
Gene expression databases
ArrayExpress	Q9P6Q1.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. Prd-pyrdxlP-dep_enz_YBL036C. [Graphical view]
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. PP_YBL036C. 1 hit.
PROSITE	PS01211. UPF0001. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

YKC9_SCHPO

Accession

Primary (citable) accession number: Q9P6Q1

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	October 1, 2000
Last modified:	November 24, 2009
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

FPAP (Fungal Proteome Annotation Project)