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Protein

Uncharacterized transcriptional regulatory protein C1683.13c

Gene

SPBC1683.13c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi18 – 4730Zn(2)-C6 fungal-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • negative regulation of transcription from RNA polymerase II promoter Source: PomBase
  • regulation of nitrogen utilization Source: PomBase
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized transcriptional regulatory protein C1683.13c
Gene namesi
ORF Names:SPBC1683.13c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC1683.13c.
PomBaseiSPBC1683.13c.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation1 Publication

GO - Cellular componenti

  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 618618Uncharacterized transcriptional regulatory protein C1683.13cPRO_0000115011Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei598 – 5981Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9P6I9.

PTM databases

iPTMnetiQ9P6I9.

Interactioni

Protein-protein interaction databases

BioGridi276544. 10 interactions.
MINTiMINT-4704066.

Structurei

3D structure databases

ProteinModelPortaliQ9P6I9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 Zn(2)-C6 fungal-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

InParanoidiQ9P6I9.
OMAiASACNIG.
OrthoDBiEOG7WHHMP.
PhylomeDBiQ9P6I9.

Family and domain databases

Gene3Di4.10.240.10. 1 hit.
InterProiIPR007219. Transcription_factor_dom_fun.
IPR001138. Zn2-C6_fun-type_DNA-bd.
[Graphical view]
PfamiPF04082. Fungal_trans. 1 hit.
PF00172. Zn_clus. 1 hit.
[Graphical view]
SMARTiSM00906. Fungal_trans. 1 hit.
SM00066. GAL4. 1 hit.
[Graphical view]
SUPFAMiSSF57701. SSF57701. 1 hit.
PROSITEiPS00463. ZN2_CY6_FUNGAL_1. 1 hit.
PS50048. ZN2_CY6_FUNGAL_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9P6I9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQMKPRQDKK NQEIFRISCQ RCRQRKIKCD RLHPCFQCVK SNSQCFYPED
60 70 80 90 100
PIRRRAPKEY VEALERQIAF FEAFVKKLAK VGSDEQSLMI QDMNNKIVNE
110 120 130 140 150
GNEYDQTPDI SARKRRKHFR MLPQNNFRYF QFYGTTNVIS ASNLTTTSEI
160 170 180 190 200
PTFKFPIFSK RKYNDTENLY EQPFHLEFDT CQELLSLFFL KQYHNFMFVF
210 220 230 240 250
RDYFIRDFEL GGGPYYSQWL LFAICSIGAM ISPDDDLKNL SNTLANIAEK
260 270 280 290 300
WVLDEGLNSP DITTLQTLLV LGIREIGRGL TFKGWLFSGM AFRLVYDMGL
310 320 330 340 350
HLDPDHWDHS EESRIDREVR RRCFWGCFTL DKLISLCYGR PPGLYLKQTD
360 370 380 390 400
VRNTTQLPYI SELDEPFEIF NKKSELFAAV SAGEDRRGLV QFWLNQVELC
410 420 430 440 450
KIIHRMLTEV FEDRTSSVLE ASINNIHTEL QKWIADIPME LQWNTRSQKE
460 470 480 490 500
TSSTVLLLHM LYHSVIIILN RPSDDNYLKL DNTERYTFEI CWKSAKTIVQ
510 520 530 540 550
LLKIYFKKYD ADCLPMTFIH IATSAARIIL VKLNENIPED GDVCNIYLEI
560 570 580 590 600
ITNALDVCAN VWPLASQASR AILNAYKSCA TSPKENNEDS LPLQRSPSLD
610
DVSRFDSLDY IFSPNVKY
Length:618
Mass (Da):72,292
Last modified:October 1, 2000 - v1
Checksum:i9D938C1345765BD3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti184 – 1841L → V in BAA87231 (PubMed:10759889).Curated
Sequence conflicti198 – 1981F → V in BAA87231 (PubMed:10759889).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB91175.1.
AB027927 Genomic DNA. Translation: BAA87231.1.
RefSeqiNP_595069.1. NM_001020975.2.

Genome annotation databases

EnsemblFungiiSPBC1683.13c.1; SPBC1683.13c.1:pep; SPBC1683.13c.
GeneIDi2540000.
KEGGispo:SPBC1683.13c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB91175.1.
AB027927 Genomic DNA. Translation: BAA87231.1.
RefSeqiNP_595069.1. NM_001020975.2.

3D structure databases

ProteinModelPortaliQ9P6I9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276544. 10 interactions.
MINTiMINT-4704066.

PTM databases

iPTMnetiQ9P6I9.

Proteomic databases

MaxQBiQ9P6I9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC1683.13c.1; SPBC1683.13c.1:pep; SPBC1683.13c.
GeneIDi2540000.
KEGGispo:SPBC1683.13c.

Organism-specific databases

EuPathDBiFungiDB:SPBC1683.13c.
PomBaseiSPBC1683.13c.

Phylogenomic databases

InParanoidiQ9P6I9.
OMAiASACNIG.
OrthoDBiEOG7WHHMP.
PhylomeDBiQ9P6I9.

Miscellaneous databases

NextBioi20801143.
PROiQ9P6I9.

Family and domain databases

Gene3Di4.10.240.10. 1 hit.
InterProiIPR007219. Transcription_factor_dom_fun.
IPR001138. Zn2-C6_fun-type_DNA-bd.
[Graphical view]
PfamiPF04082. Fungal_trans. 1 hit.
PF00172. Zn_clus. 1 hit.
[Graphical view]
SMARTiSM00906. Fungal_trans. 1 hit.
SM00066. GAL4. 1 hit.
[Graphical view]
SUPFAMiSSF57701. SSF57701. 1 hit.
PROSITEiPS00463. ZN2_CY6_FUNGAL_1. 1 hit.
PS50048. ZN2_CY6_FUNGAL_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "Large-scale screening of intracellular protein localization in living fission yeast cells by the use of a GFP-fusion genomic DNA library."
    Ding D.-Q., Tomita Y., Yamamoto A., Chikashige Y., Haraguchi T., Hiraoka Y.
    Genes Cells 5:169-190(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 184-385, SUBCELLULAR LOCATION.
    Strain: ATCC 38364 / 968.
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-598, IDENTIFICATION BY MASS SPECTROMETRY.

Entry informationi

Entry nameiYHDD_SCHPO
AccessioniPrimary (citable) accession number: Q9P6I9
Secondary accession number(s): Q9UTY6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 16, 2003
Last sequence update: October 1, 2000
Last modified: January 20, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.