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Protein

Probable U3 small nucleolar RNA-associated protein 7

Gene

utp7

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in nucleolar processing of pre-18S ribosomal RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Probable U3 small nucleolar RNA-associated protein 7
Short name:
U3 snoRNA-associated protein 7
Alternative name(s):
U three protein 7
Gene namesi
Name:utp7
ORF Names:SPAC959.03c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC959.03c.
PomBaseiSPAC959.03c. utp7.

Subcellular locationi

GO - Cellular componenti

  • nucleolus Source: PomBase
  • small nucleolar ribonucleoprotein complex Source: PomBase
  • small-subunit processome Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 520520Probable U3 small nucleolar RNA-associated protein 7PRO_0000316546Add
BLAST

Proteomic databases

MaxQBiQ9P4X3.

Interactioni

Protein-protein interaction databases

BioGridi279904. 4 interactions.
MINTiMINT-4703926.

Structurei

3D structure databases

ProteinModelPortaliQ9P4X3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati99 – 14042WD 1Add
BLAST
Repeati142 – 17938WD 2Add
BLAST
Repeati218 – 26043WD 3Add
BLAST
Repeati263 – 30240WD 4Add
BLAST

Sequence similaritiesi

Contains 4 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

HOGENOMiHOG000165037.
InParanoidiQ9P4X3.
KOiK14768.
OMAiRNWKGAV.
OrthoDBiEOG786HCW.
PhylomeDBiQ9P4X3.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR012952. BING4_C_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF08149. BING4CT. 1 hit.
PF00400. WD40. 1 hit.
[Graphical view]
SMARTiSM01033. BING4CT. 1 hit.
SM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9P4X3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAQKLNLED VNASTKKYSR GRKLNPKKIK DKKLRSNIQK IEERIENVES
60 70 80 90 100
SLAKTEILHE DNPGLLEAEG LERTYKFRQD QLAPNVALET ATKSFSLDLD
110 120 130 140 150
KFGGYSFDYT RDGRMILLGG RKGHISAFDW RTGKLLTELH LRETVRDVKW
160 170 180 190 200
FHNHQYFAVA QKKYVYVYDN MGTEIHCLKR HIEVNALDFL PYHLLLTSIG
210 220 230 240 250
NAGYLKYQDV STGQLVAEHR TGMGASHVLH QNPHNAVEHV GHANGQVTLW
260 270 280 290 300
SPSSTTPLVK MLTHRGPVRD LAVNRDGRYM VTAGADSLLK VWDLRTYKEL
310 320 330 340 350
HSYYTPTPAQ RLTLSDRGLL AVGWGPHATI WKDALRTKQN FPYMNHLLPS
360 370 380 390 400
SSVVDLHYCP YEDILGIGHA KGFESIIVPG SGEPNYDSYE NDPFASRKQR
410 420 430 440 450
QETEVRQLLE KLRPEMISLN ADFIGNVDRA APSLRKAEAE EEKPPEEKWV
460 470 480 490 500
PKAKARGKNS ALRRYLRKHA RNVVDQRRLK VEKSLEIEKK MRAQRVRREQ
510 520
KLPEEREKWG YALSRFVSKK
Length:520
Mass (Da):59,758
Last modified:October 1, 2000 - v1
Checksum:i965914DA5D978EAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB93010.1.
RefSeqiNP_594170.1. NM_001019594.2.

Genome annotation databases

EnsemblFungiiSPAC959.03c.1; SPAC959.03c.1:pep; SPAC959.03c.
GeneIDi2543484.
KEGGispo:SPAC959.03c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB93010.1.
RefSeqiNP_594170.1. NM_001019594.2.

3D structure databases

ProteinModelPortaliQ9P4X3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279904. 4 interactions.
MINTiMINT-4703926.

Proteomic databases

MaxQBiQ9P4X3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC959.03c.1; SPAC959.03c.1:pep; SPAC959.03c.
GeneIDi2543484.
KEGGispo:SPAC959.03c.

Organism-specific databases

EuPathDBiFungiDB:SPAC959.03c.
PomBaseiSPAC959.03c. utp7.

Phylogenomic databases

HOGENOMiHOG000165037.
InParanoidiQ9P4X3.
KOiK14768.
OMAiRNWKGAV.
OrthoDBiEOG786HCW.
PhylomeDBiQ9P4X3.

Miscellaneous databases

NextBioi20804496.
PROiQ9P4X3.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR012952. BING4_C_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF08149. BING4CT. 1 hit.
PF00400. WD40. 1 hit.
[Graphical view]
SMARTiSM01033. BING4CT. 1 hit.
SM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiUTP7_SCHPO
AccessioniPrimary (citable) accession number: Q9P4X3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: October 1, 2000
Last modified: May 11, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.