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Protein

Uncharacterized RNA-binding protein C328.05

Gene

SPAC328.05

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA-binding protein C328.05
Gene namesi
ORF Names:SPAC328.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC328.05.
PomBaseiSPAC328.05.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: PomBase
  • cytosol Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003108151 – 464Uncharacterized RNA-binding protein C328.05Add BLAST464

Proteomic databases

MaxQBiQ9P3U1.
PRIDEiQ9P3U1.

Interactioni

Protein-protein interaction databases

BioGridi279023. 18 interactors.
MINTiMINT-4703714.

Structurei

3D structure databases

ProteinModelPortaliQ9P3U1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini77 – 154RRM 1PROSITE-ProRule annotationAdd BLAST78
Domaini179 – 256RRM 2PROSITE-ProRule annotationAdd BLAST78
Domaini310 – 387RRM 3PROSITE-ProRule annotationAdd BLAST78

Sequence similaritiesi

Contains 3 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

InParanoidiQ9P3U1.
OMAiSREDANN.
OrthoDBiEOG092C5H62.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9P3U1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKPIEWNEF DSGMGSKLDV SSSLNSSSSN MDRDRSESPK RHVNGSNSLK
60 70 80 90 100
RGLHFDGEHT ERDPHLGNGQ KYTQQERRVY VGNLSYQVRW FELKEFMGQV
110 120 130 140 150
GNVLNCEILN LPNGLSKGCA IIEYSTAEEA RTAIKTLSNQ KFMGRLVYIR
160 170 180 190 200
EDREQNARFG SSSVSPSASS NGKDSEPDRQ LFVGNLPYNV RWQDLKDLFR
210 220 230 240 250
QAGSVIRADI QMNQEGRSRG IGIVVMSSMK EAMHAIQMLH NTDFMGRTLE
260 270 280 290 300
VRLDRFAHHK SKPYSTHGNG YTFPAEMQMT TSSTYLPMLG ANTQVEDLVY
310 320 330 340 350
HAYPHGPCSD CIYVGNLPWA TSDRNLLDLF TDIGSVIRAR IAYEPTGRSK
360 370 380 390 400
GFGVVQFENE NDAASSIEKL NGYRYGGRPL QLSYAHYATP LPAVPTVLSG
410 420 430 440 450
LPSVAYTPPV MHIPTTNSPL TPQSFTNSFL GYLPISMPVA NMPAIAPISV
460
ALPENNIEHS LEPS
Length:464
Mass (Da):51,594
Last modified:June 13, 2012 - v3
Checksum:i7C83EA35F9E68456
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB96000.3.
RefSeqiNP_594207.3. NM_001019630.3.

Genome annotation databases

EnsemblFungiiSPAC328.05.1; SPAC328.05.1:pep; SPAC328.05.
GeneIDi2542567.
KEGGispo:SPAC328.05.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB96000.3.
RefSeqiNP_594207.3. NM_001019630.3.

3D structure databases

ProteinModelPortaliQ9P3U1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279023. 18 interactors.
MINTiMINT-4703714.

Proteomic databases

MaxQBiQ9P3U1.
PRIDEiQ9P3U1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC328.05.1; SPAC328.05.1:pep; SPAC328.05.
GeneIDi2542567.
KEGGispo:SPAC328.05.

Organism-specific databases

EuPathDBiFungiDB:SPAC328.05.
PomBaseiSPAC328.05.

Phylogenomic databases

InParanoidiQ9P3U1.
OMAiSREDANN.
OrthoDBiEOG092C5H62.

Miscellaneous databases

PROiQ9P3U1.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYKX5_SCHPO
AccessioniPrimary (citable) accession number: Q9P3U1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: June 13, 2012
Last modified: November 30, 2016
This is version 99 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.