Q9P2D3 (HTR5B_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 80.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: HEAT repeat-containing protein 5B | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 2071 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Sequence similarities | Belongs to the HEATR5 family. Contains 3 HEAT repeats. |
| Sequence caution | The sequence BAA91733.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| None. [Check GOA] | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9P2D3-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9P2D3-2) The sequence of this isoform differs from the canonical sequence as follows: 763-768: RIPAGE → LLFLVH 769-2071: Missing. | ||||||
| Isoform 3 (identifier: Q9P2D3-3) The sequence of this isoform differs from the canonical sequence as follows: 1684-1773: NEDDMEKEAC...DLPSLCSPAG → R |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2071 | 2071 | HEAT repeat-containing protein 5B | PRO_0000311994 | |||||
Regions | |||||||||
| Repeat | 848 – 885 | 38 | HEAT 1 | ||||||
| Repeat | 1062 – 1099 | 38 | HEAT 2 | ||||||
| Repeat | 1290 – 1327 | 38 | HEAT 3 | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1123 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 1737 | 1 | Phosphoserine Ref.6 | ||||||
Natural variations | |||||||||
| Alternative sequence | 763 – 768 | 6 | RIPAGE → LLFLVH in isoform 2. | VSP_029690 | |||||
| Alternative sequence | 769 – 2071 | 1303 | Missing in isoform 2. | VSP_029691 | |||||
| Alternative sequence | 1684 – 1773 | 90 | NEDDM…CSPAG → R in isoform 3. | VSP_029692 | |||||
| Natural variant | 1601 | 1 | S → P. Corresponds to variant rs2302657 [ dbSNP | Ensembl ]. | VAR_037392 | |||||
Experimental info | |||||||||
| Sequence conflict | 324 | 1 | E → G in CAD97959. Ref.2 | ||||||
| Sequence conflict | 1640 | 1 | E → G in BAA91733. Ref.4 | ||||||
Sequences
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References
| [1] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 262-2071 (ISOFORM 2). Tissue: Amygdala. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O. DNA Res. 7:65-73(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 486-2071 (ISOFORM 1). Tissue: Brain. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1399-2071 (ISOFORM 3). Tissue: Teratocarcinoma. |
| [5] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1123, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1737, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC007404 Genomic DNA. No translation available. AC007899 Genomic DNA. No translation available. BX538008 mRNA. Translation: CAD97959.1. AB037835 mRNA. Translation: BAA92652.1. AK001513 mRNA. Translation: BAA91733.1. Different initiation. |
| IPI | IPI00333696. IPI00479069. IPI00877102. |
| RefSeq | NP_061897.1. NM_019024.1. |
| UniGene | Hs.468186. |
3D structure databases | |
| ProteinModelPortal | Q9P2D3. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9P2D3. 1 interaction. |
PTM databases | |
| PhosphoSite | Q9P2D3. |
Polymorphism databases | |
| DMDM | 162416219. |
Proteomic databases | |
| PaxDb | Q9P2D3. |
| PeptideAtlas | Q7Z3B2. |
| PRIDE | Q9P2D3. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000233099; ENSP00000233099; ENSG00000008869. ENST00000354531; ENSP00000346531; ENSG00000008869. |
| GeneID | 54497. |
| KEGG | hsa:54497. |
| UCSC | uc002rpp.1. human. |
Organism-specific databases | |
| CTD | 54497. |
| GeneCards | GC02M037195. |
| H-InvDB | HIX0001970. HIX0161853. |
| HGNC | HGNC:29273. HEATR5B. |
| HPA | HPA042025. |
| neXtProt | NX_Q9P2D3. |
| PharmGKB | PA162390697. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG289817. |
| HOGENOM | HOG000021545. |
| HOVERGEN | HBG056837. |
| InParanoid | Q9P2D3. |
| OMA | WNPPSVQ. |
| OrthoDB | EOG4MPHP7. |
Gene expression databases | |
| ArrayExpress | Q9P2D3. |
| Bgee | Q9P2D3. |
| CleanEx | HS_HEATR5B. |
| Genevestigator | Q9P2D3. |
Family and domain databases | |
| Gene3D | 1.25.10.10. 5 hits. |
| InterPro | IPR011989. ARM-like. IPR016024. ARM-type_fold. [Graphical view] |
| SUPFAM | SSF48371. ARM-type_fold. 2 hits. |
| PROSITE | PS50077. HEAT_REPEAT. False negative. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | HEATR5B. human. |
| GenomeRNAi | 54497. |
| NextBio | 56832. |
Entry information
| Entry name | HTR5B_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9P2D3 Secondary accession number(s): B5MDU8, Q7Z3B2, Q9NVL7 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
