Q9P273 (TEN3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 76.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Teneurin-3 Short name=Ten-3 Alternative name(s): Protein Odd Oz/ten-m homolog 3 Tenascin-M3 Short name=Ten-m3 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 2699 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | May function as a cellular signal transducer. |
| Subunit structure | Homodimer; disulfide-linked Probable. |
| Subcellular location | Membrane; Single-pass type II membrane protein Probable. |
| Tissue specificity | Expressed in adult and fetal brain, slightly lower levels in testis and ovary, and intermediate levels in all other peripheral tissues examined. Not expressed in spleen or liver. Expression was high in brain, with highest levels in amygdala and caudate nucleus, followed by thalamus and subthalamic nucleus. Ref.2 Ref.3 |
| Domain | EGF-like domains 2 and 5 which have an odd number of cysteines might enable the formation of intermolecular disulfide bonds. Cytoplasmic proline-rich regions could serve as docking domains for intracellular SH3-containing proteins. |
| Sequence similarities | Belongs to the tenascin family. Teneurin subfamily. Contains 8 EGF-like domains. Contains 5 NHL repeats. Contains 1 teneurin N-terminal domain. Contains 23 YD repeats. |
| Sequence caution | The sequence BAA91633.1 differs from that shown. Reason: Erroneous initiation. The sequence BAA91879.1 differs from that shown. Reason: Erroneous initiation. The sequence BAB55138.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Membrane |
| Coding sequence diversity | Polymorphism |
| Domain | EGF-like domain Repeat Signal-anchor Transmembrane Transmembrane helix |
| PTM | Disulfide bond Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | signal transduction Inferred from electronic annotation. Source: InterPro |
| Cellular component | integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2699 | 2699 | Teneurin-3 | PRO_0000259505 | |||||||
Regions | |||||||||||
| Topological domain | 1 – 310 | 310 | Cytoplasmic Potential | ||||||||
| Transmembrane | 311 – 331 | 21 | Helical; Potential | ||||||||
| Topological domain | 332 – 2699 | 2368 | Extracellular Potential | ||||||||
| Domain | 1 – 309 | 309 | Teneurin N-terminal | ||||||||
| Domain | 514 – 545 | 32 | EGF-like 1 | ||||||||
| Domain | 546 – 576 | 31 | EGF-like 2 | ||||||||
| Domain | 578 – 610 | 33 | EGF-like 3 | ||||||||
| Domain | 611 – 642 | 32 | EGF-like 4 | ||||||||
| Domain | 644 – 677 | 34 | EGF-like 5 | ||||||||
| Domain | 678 – 709 | 32 | EGF-like 6 | ||||||||
| Domain | 710 – 739 | 30 | EGF-like 7 | ||||||||
| Domain | 740 – 774 | 35 | EGF-like 8 | ||||||||
| Repeat | 1200 – 1244 | 45 | NHL 1 | ||||||||
| Repeat | 1270 – 1314 | 45 | NHL 2 | ||||||||
| Repeat | 1331 – 1371 | 41 | NHL 3 | ||||||||
| Repeat | 1402 – 1429 | 28 | NHL 4 | ||||||||
| Repeat | 1458 – 1501 | 44 | NHL 5 | ||||||||
| Repeat | 1511 – 1530 | 20 | YD 1 | ||||||||
| Repeat | 1547 – 1567 | 21 | YD 2 | ||||||||
| Repeat | 1610 – 1629 | 20 | YD 3 | ||||||||
| Repeat | 1630 – 1652 | 23 | YD 4 | ||||||||
| Repeat | 1823 – 1842 | 20 | YD 5 | ||||||||
| Repeat | 1864 – 1882 | 19 | YD 6 | ||||||||
| Repeat | 1883 – 1903 | 21 | YD 7 | ||||||||
| Repeat | 1910 – 1927 | 18 | YD 8 | ||||||||
| Repeat | 1928 – 1949 | 22 | YD 9 | ||||||||
| Repeat | 1950 – 1967 | 18 | YD 10 | ||||||||
| Repeat | 1970 – 1990 | 21 | YD 11 | ||||||||
| Repeat | 1993 – 2013 | 21 | YD 12 | ||||||||
| Repeat | 2021 – 2040 | 20 | YD 13 | ||||||||
| Repeat | 2046 – 2063 | 18 | YD 14 | ||||||||
| Repeat | 2064 – 2090 | 27 | YD 15 | ||||||||
| Repeat | 2092 – 2105 | 14 | YD 16 | ||||||||
| Repeat | 2106 – 2129 | 24 | YD 17 | ||||||||
| Repeat | 2132 – 2152 | 21 | YD 18 | ||||||||
| Repeat | 2153 – 2173 | 21 | YD 19 | ||||||||
| Repeat | 2175 – 2195 | 21 | YD 20 | ||||||||
| Repeat | 2207 – 2227 | 21 | YD 21 | ||||||||
| Repeat | 2229 – 2249 | 21 | YD 22 | ||||||||
| Repeat | 2275 – 2316 | 42 | YD 23 | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 345 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 380 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 419 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 670 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 860 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 883 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1202 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1527 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1544 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1640 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1677 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1735 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1820 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1921 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2124 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2264 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2576 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 518 ↔ 528 | By similarity | |||||||||
| Disulfide bond | 522 ↔ 533 | By similarity | |||||||||
| Disulfide bond | 535 ↔ 544 | By similarity | |||||||||
| Disulfide bond | 553 ↔ 564 | By similarity | |||||||||
| Disulfide bond | 566 ↔ 575 | By similarity | |||||||||
| Disulfide bond | 582 ↔ 593 | By similarity | |||||||||
| Disulfide bond | 587 ↔ 598 | By similarity | |||||||||
| Disulfide bond | 600 ↔ 609 | By similarity | |||||||||
| Disulfide bond | 614 ↔ 625 | By similarity | |||||||||
| Disulfide bond | 619 ↔ 630 | By similarity | |||||||||
| Disulfide bond | 632 ↔ 641 | By similarity | |||||||||
| Disulfide bond | 652 ↔ 665 | By similarity | |||||||||
| Disulfide bond | 667 ↔ 676 | By similarity | |||||||||
| Disulfide bond | 681 ↔ 691 | By similarity | |||||||||
| Disulfide bond | 685 ↔ 696 | By similarity | |||||||||
| Disulfide bond | 698 ↔ 707 | By similarity | |||||||||
| Disulfide bond | 712 ↔ 722 | By similarity | |||||||||
| Disulfide bond | 716 ↔ 727 | By similarity | |||||||||
| Disulfide bond | 729 ↔ 738 | By similarity | |||||||||
| Disulfide bond | 743 ↔ 753 | By similarity | |||||||||
| Disulfide bond | 747 ↔ 762 | By similarity | |||||||||
| Disulfide bond | 764 ↔ 773 | By similarity | |||||||||
Natural variations | |||||||||||
| Natural variant | 385 | 1 | S → C. Corresponds to variant rs3749509 [ dbSNP | Ensembl ]. | VAR_053796 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 435 | 1 | G → K in AAF28318. Ref.2 | ||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed: 15815621] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "The mammalian Odz gene family: homologs of a Drosophila pair-rule gene with expression implying distinct yet overlapping developmental roles." Ben-Zur T., Feige E., Motro B., Wides R. Dev. Biol. 217:107-120(2000) [PubMed: 10625539] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-442, TISSUE SPECIFICITY. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O. DNA Res. 7:143-150(2000) [PubMed: 10819331] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 250-2699, TISSUE SPECIFICITY. Tissue: Brain. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1606-2699. |
| [5] | "Identification of an ODZ3-like gene in Homo sapiens." Steckler N.K., Lau J.M., Robinson D.L. Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 2503-2583. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC131943 Genomic DNA. No translation available. AC093601 Genomic DNA. No translation available. AC109353 Genomic DNA. No translation available. AC105288 Genomic DNA. No translation available. AC079226 Genomic DNA. No translation available. AF195420 mRNA. Translation: AAF28318.1. AB040888 mRNA. Translation: BAA95979.2. AK001336 mRNA. Translation: BAA91633.1. Different initiation. AK001748 mRNA. Translation: BAA91879.1. Different initiation. AK027473 mRNA. Translation: BAB55138.1. Different initiation. AY736855 Genomic DNA. Translation: AAU84915.1. |
| IPI | IPI00398020. |
| RefSeq | NP_001073946.1. NM_001080477.1. |
| UniGene | Hs.130438. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1RWL based on UniProtKB O05871. |
| ProteinModelPortal | Q9P273. |
| SMR | Q9P273. Positions 517-812, 1172-1372, 1402-1437, 1469-1499. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9P273. 2 interactions. |
| MINT | MINT-1191493. |
| STRING | Q9P273. |
PTM databases | |
| PhosphoSite | Q9P273. |
Polymorphism databases | |
| DMDM | 118573058. |
Proteomic databases | |
| PRIDE | Q9P273. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000406950; ENSP00000385276; ENSG00000218336. |
| GeneID | 55714. |
| KEGG | hsa:55714. |
| UCSC | uc003ivd.1. human. |
Organism-specific databases | |
| CTD | 55714. |
| GeneCards | GC04P183065. |
| H-InvDB | HIX0004656. |
| HGNC | HGNC:29944. ODZ3. |
| MIM | 610083. gene. |
| neXtProt | NX_Q9P273. |
| PharmGKB | PA134961178. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG19791. |
| GeneTree | ENSGT00580000081247. |
| HOGENOM | HBG444169. |
| HOVERGEN | HBG080306. |
| InParanoid | Q9P273. |
| OMA | SQQWDDV. |
| OrthoDB | EOG4QC14D. |
| PhylomeDB | Q9P273. |
Gene expression databases | |
| ArrayExpress | Q9P273. |
| Bgee | Q9P273. |
| CleanEx | HS_ODZ3. |
| Genevestigator | Q9P273. |
| GermOnline | ENSG00000109716. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011042. 6-blade_b-propeller_TolB-like. IPR008969. CarboxyPept-like_regulatory. IPR006210. EGF-like. IPR013032. EGF-like_reg_CS. IPR000742. EGF_3. IPR013111. EGF_extracell. IPR022385. Rhs_assc_core. IPR009471. Ten_N. IPR006530. YD. [Graphical view] |
| Gene3D | G3DSA:2.120.10.30. 6-blade_b-propeller_TolB-like. 1 hit. |
| Pfam | PF07974. EGF_2. 1 hit. PF06484. Ten_N. 2 hits. [Graphical view] |
| SMART | SM00181. EGF. 7 hits. [Graphical view] |
| SUPFAM | SSF49464. CarboxypepD_reg. 1 hit. |
| TIGRFAMs | TIGR03696. Rhs_assc_core. 1 hit. TIGR01643. YD_repeat_2x. 2 hits. |
| PROSITE | PS00022. EGF_1. 8 hits. PS01186. EGF_2. 7 hits. PS50026. EGF_3. 4 hits. PS51125. NHL. False negative. PS51361. TENEURIN_N. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 60587. |
| SOURCE | Search... |
Entry information
| Entry name | TEN3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9P273 Secondary accession number(s): Q5XUL9 Q9NZJ2 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 4 Human chromosome 4: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with