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Q9NZH0

- GPC5B_HUMAN

UniProt

Q9NZH0 - GPC5B_HUMAN

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Protein
G-protein coupled receptor family C group 5 member B
Gene
GPRC5B, RAIG2
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Unknown. This retinoic acid-inducible G-protein coupled receptor provide evidence for a possible interaction between retinoid and G-protein signaling pathways.

GO - Molecular functioni

  1. G-protein coupled receptor activity Source: UniProtKB-KW
  2. G-protein coupled receptor binding Source: UniProt
  3. protein kinase activator activity Source: MGI
  4. protein kinase binding Source: UniProt

GO - Biological processi

  1. locomotory behavior Source: Ensembl
  2. positive regulation of I-kappaB kinase/NF-kappaB signaling Source: UniProt
  3. positive regulation of canonical Wnt signaling pathway Source: UniProt
  4. positive regulation of inflammatory response Source: UniProt
  5. positive regulation of macrophage cytokine production Source: UniProt
  6. positive regulation of neuron differentiation Source: UniProt
  7. positive regulation of neuron projection development Source: Ensembl
  8. positive regulation of protein tyrosine kinase activity Source: UniProt
Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptor, Receptor, Transducer

Names & Taxonomyi

Protein namesi
Recommended name:
G-protein coupled receptor family C group 5 member B
Alternative name(s):
A-69G12.1
Retinoic acid-induced gene 2 protein
Short name:
RAIG-2
Gene namesi
Name:GPRC5B
Synonyms:RAIG2
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 16

Organism-specific databases

HGNCiHGNC:13308. GPRC5B.

Subcellular locationi

Cell membrane; Multi-pass membrane protein. Cytoplasmic vesicle membrane; Multi-pass membrane protein
Note: Localized in the plasma membrane and perinuclear vesicles.1 Publication

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini29 – 5628Extracellular Reviewed prediction
Add
BLAST
Transmembranei57 – 7721Helical; Name=1; Reviewed prediction
Add
BLAST
Topological domaini78 – 9417Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei95 – 11521Helical; Name=2; Reviewed prediction
Add
BLAST
Topological domaini116 – 12611Extracellular Reviewed prediction
Add
BLAST
Transmembranei127 – 14721Helical; Name=3; Reviewed prediction
Add
BLAST
Topological domaini148 – 16215Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei163 – 18321Helical; Name=4; Reviewed prediction
Add
BLAST
Topological domaini184 – 19916Extracellular Reviewed prediction
Add
BLAST
Transmembranei200 – 22021Helical; Name=5; Reviewed prediction
Add
BLAST
Topological domaini221 – 23414Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei235 – 25521Helical; Name=6; Reviewed prediction
Add
BLAST
Topological domaini256 – 27116Extracellular Reviewed prediction
Add
BLAST
Transmembranei272 – 29221Helical; Name=7; Reviewed prediction
Add
BLAST
Topological domaini293 – 403111Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. cell surface Source: UniProt
  2. cytoplasmic vesicle membrane Source: UniProtKB-SubCell
  3. extracellular space Source: UniProt
  4. extracellular vesicular exosome Source: UniProtKB
  5. integral component of membrane Source: UniProtKB-KW
  6. intracellular membrane-bounded organelle Source: HPA
  7. nucleolus Source: HPA
  8. nucleus Source: HPA
  9. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cytoplasmic vesicle, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA28938.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828 Reviewed prediction
Add
BLAST
Chaini29 – 403375G-protein coupled receptor family C group 5 member B
PRO_0000012965Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi30 – 301N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ9NZH0.
PRIDEiQ9NZH0.

PTM databases

PhosphoSiteiQ9NZH0.

Expressioni

Tissue specificityi

Expression is high in kidney, pancreas, and testis, medium in brain, heart, prostate, small intestine, and spleen, low in liver, placenta, skeletal muscle, colon, ovary, and thymus, and not detectable in lung and peripheral leukocyte. According to 1 Publication, highly expressed in most brain areas examined, with the highest levels observed in corpus callosum, caudate nucleus, putamen, substantia nigra, thalamus, hippocampus, and spinal chord as well as in dorsal root ganglia (DRG). In the periphery, expression levels are relatively low, compared to the CNS, with the strongest expression detected in pancreas, testis, uterus, and stomach.2 Publications

Inductioni

By all-trans retinoic acid (ATRA).1 Publication

Gene expression databases

ArrayExpressiQ9NZH0.
BgeeiQ9NZH0.
CleanExiHS_GPRC5B.
GenevestigatoriQ9NZH0.

Organism-specific databases

HPAiHPA015247.

Interactioni

Protein-protein interaction databases

BioGridi119688. 3 interactions.
IntActiQ9NZH0. 1 interaction.
STRINGi9606.ENSP00000300571.

Structurei

3D structure databases

ProteinModelPortaliQ9NZH0.
SMRiQ9NZH0. Positions 27-261.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG150878.
HOVERGENiHBG051794.
InParanoidiQ9NZH0.
KOiK04619.
OrthoDBiEOG7RRF79.
TreeFamiTF321410.

Family and domain databases

InterProiIPR017978. GPCR_3_C.
[Graphical view]
PfamiPF00003. 7tm_3. 1 hit.
[Graphical view]
PROSITEiPS50259. G_PROTEIN_RECEP_F3_4. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9NZH0-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MFVASERKMR AHQVLTFLLL FVITSVASEN ASTSRGCGLD LLPQYVSLCD    50
LDAIWGIVVE AVAGAGALIT LLLMLILLVR LPFIKEKEKK SPVGLHFLFL 100
LGTLGLFGLT FAFIIQEDET ICSVRRFLWG VLFALCFSCL LSQAWRVRRL 150
VRHGTGPAGW QLVGLALCLM LVQVIIAVEW LVLTVLRDTR PACAYEPMDF 200
VMALIYDMVL LVVTLGLALF TLCGKFKRWK LNGAFLLITA FLSVLIWVAW 250
MTMYLFGNVK LQQGDAWNDP TLAITLAASG WVFVIFHAIP EIHCTLLPAL 300
QENTPNYFDT SQPRMRETAF EEDVQLPRAY MENKAFSMDE HNAALRTAGF 350
PNGSLGKRPS GSLGKRPSAP FRSNVYQPTE MAVVLNGGTI PTAPPSHTGR 400
HLW 403
Length:403
Mass (Da):44,795
Last modified:April 13, 2004 - v2
Checksum:i3902A16C4F69C26E
GO
Isoform 2 (identifier: Q9NZH0-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     390-403: IPTAPPSHTGRHLW → EMVTHPRSLESFGAF

Show »
Length:404
Mass (Da):44,933
Checksum:i4DE2B3914E6C396A
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei390 – 40314IPTAP…GRHLW → EMVTHPRSLESFGAF in isoform 2.
VSP_047585Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti46 – 461V → A in BAC11414. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF202640 mRNA. Translation: AAF67321.1.
AJ276101 mRNA. Translation: CAC00632.1.
AF181862 mRNA. Translation: AAF05331.1.
FJ529380 mRNA. Translation: ACU30030.1.
AK075119 mRNA. Translation: BAC11414.1.
AC004131 Genomic DNA. Translation: AAC27544.1.
AC134300 Genomic DNA. No translation available.
BC034467 mRNA. Translation: AAH34467.1.
CCDSiCCDS10581.1. [Q9NZH0-1]
RefSeqiNP_057319.1. NM_016235.1. [Q9NZH0-1]
XP_006721114.1. XM_006721051.1. [Q9NZH0-1]
XP_006721115.1. XM_006721052.1. [Q9NZH0-1]
UniGeneiHs.148685.

Genome annotation databases

EnsembliENST00000300571; ENSP00000300571; ENSG00000167191. [Q9NZH0-1]
ENST00000535671; ENSP00000442858; ENSG00000167191. [Q9NZH0-2]
ENST00000569479; ENSP00000454727; ENSG00000167191. [Q9NZH0-1]
ENST00000569847; ENSP00000457283; ENSG00000167191. [Q9NZH0-1]
GeneIDi51704.
KEGGihsa:51704.
UCSCiuc002dgt.3. human. [Q9NZH0-1]

Polymorphism databases

DMDMi46396016.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF202640 mRNA. Translation: AAF67321.1 .
AJ276101 mRNA. Translation: CAC00632.1 .
AF181862 mRNA. Translation: AAF05331.1 .
FJ529380 mRNA. Translation: ACU30030.1 .
AK075119 mRNA. Translation: BAC11414.1 .
AC004131 Genomic DNA. Translation: AAC27544.1 .
AC134300 Genomic DNA. No translation available.
BC034467 mRNA. Translation: AAH34467.1 .
CCDSi CCDS10581.1. [Q9NZH0-1 ]
RefSeqi NP_057319.1. NM_016235.1. [Q9NZH0-1 ]
XP_006721114.1. XM_006721051.1. [Q9NZH0-1 ]
XP_006721115.1. XM_006721052.1. [Q9NZH0-1 ]
UniGenei Hs.148685.

3D structure databases

ProteinModelPortali Q9NZH0.
SMRi Q9NZH0. Positions 27-261.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 119688. 3 interactions.
IntActi Q9NZH0. 1 interaction.
STRINGi 9606.ENSP00000300571.

Protein family/group databases

GPCRDBi Search...

PTM databases

PhosphoSitei Q9NZH0.

Polymorphism databases

DMDMi 46396016.

Proteomic databases

MaxQBi Q9NZH0.
PRIDEi Q9NZH0.

Protocols and materials databases

DNASUi 51704.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000300571 ; ENSP00000300571 ; ENSG00000167191 . [Q9NZH0-1 ]
ENST00000535671 ; ENSP00000442858 ; ENSG00000167191 . [Q9NZH0-2 ]
ENST00000569479 ; ENSP00000454727 ; ENSG00000167191 . [Q9NZH0-1 ]
ENST00000569847 ; ENSP00000457283 ; ENSG00000167191 . [Q9NZH0-1 ]
GeneIDi 51704.
KEGGi hsa:51704.
UCSCi uc002dgt.3. human. [Q9NZH0-1 ]

Organism-specific databases

CTDi 51704.
GeneCardsi GC16M019868.
HGNCi HGNC:13308. GPRC5B.
HPAi HPA015247.
MIMi 605948. gene.
neXtProti NX_Q9NZH0.
PharmGKBi PA28938.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG150878.
HOVERGENi HBG051794.
InParanoidi Q9NZH0.
KOi K04619.
OrthoDBi EOG7RRF79.
TreeFami TF321410.

Miscellaneous databases

GeneWikii GPRC5B.
GenomeRNAii 51704.
NextBioi 35489311.
PROi Q9NZH0.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9NZH0.
Bgeei Q9NZH0.
CleanExi HS_GPRC5B.
Genevestigatori Q9NZH0.

Family and domain databases

InterProi IPR017978. GPCR_3_C.
[Graphical view ]
Pfami PF00003. 7tm_3. 1 hit.
[Graphical view ]
PROSITEi PS50259. G_PROTEIN_RECEP_F3_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and expression pattern of a novel human orphan G-protein-coupled receptor, GPRC5B, a family C receptor with a short amino-terminal domain."
    Braeuner-Osborne H., Krogsgaard-Larsen P.
    Genomics 65:121-128(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY.
  2. "Molecular cloning and characterization of two novel retinoic acid-inducible orphan G-protein-coupled receptors (GPRC5B and GPRC5C)."
    Robbins M.J., Michalovich D., Hill J., Calver A.R., Medhurst A.D., Gloger I., Sims M.A., Middlemiss D.N., Pangalos M.N.
    Genomics 67:8-18(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INDUCTION.
  3. "Cloning of a novel G protein-coupled receptor localized on human chromosome 16p12."
    Wei H., Osborne B., Spruyt M., Murphy D.
    Submitted (AUG-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    Tissue: Brain.
  4. "C-terminal splice variants of Gprc5b, an orphan G protein-coupled receptor that binds Frizzled Wnt receptors, are expressed in maturing neurons and influence neurite outgrowth."
    Cool B.H., Chan G.C.K., Lee L., Oshima J., Martin G.M., Hu Q.
    Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
    Tissue: Brain.
  5. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Placenta.
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. "The sequence and analysis of duplication-rich human chromosome 16."
    Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J.
    , Buckingham J.M., Callen D.F., Campbell C.S., Campbell M.L., Campbell E.W., Caoile C., Challacombe J.F., Chasteen L.A., Chertkov O., Chi H.C., Christensen M., Clark L.M., Cohn J.D., Denys M., Detter J.C., Dickson M., Dimitrijevic-Bussod M., Escobar J., Fawcett J.J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Goodwin L.A., Grady D.L., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Hildebrand C.E., Huang W., Israni S., Jett J., Jewett P.B., Kadner K., Kimball H., Kobayashi A., Krawczyk M.-C., Leyba T., Longmire J.L., Lopez F., Lou Y., Lowry S., Ludeman T., Manohar C.F., Mark G.A., McMurray K.L., Meincke L.J., Morgan J., Moyzis R.K., Mundt M.O., Munk A.C., Nandkeshwar R.D., Pitluck S., Pollard M., Predki P., Parson-Quintana B., Ramirez L., Rash S., Retterer J., Ricke D.O., Robinson D.L., Rodriguez A., Salamov A., Saunders E.H., Scott D., Shough T., Stallings R.L., Stalvey M., Sutherland R.D., Tapia R., Tesmer J.G., Thayer N., Thompson L.S., Tice H., Torney D.C., Tran-Gyamfi M., Tsai M., Ulanovsky L.E., Ustaszewska A., Vo N., White P.S., Williams A.L., Wills P.L., Wu J.-R., Wu K., Yang J., DeJong P., Bruce D., Doggett N.A., Deaven L., Schmutz J., Grimwood J., Richardson P., Rokhsar D.S., Eichler E.E., Gilna P., Lucas S.M., Myers R.M., Rubin E.M., Pennacchio L.A.
    Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  8. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Testis.

Entry informationi

Entry nameiGPC5B_HUMAN
AccessioniPrimary (citable) accession number: Q9NZH0
Secondary accession number(s): D2DFB0, O75205, Q8NBZ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: April 13, 2004
Last modified: September 3, 2014
This is version 104 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

It is uncertain whether Met-1 or Met-9 is the initiator.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. 7-transmembrane G-linked receptors
    List of 7-transmembrane G-linked receptor entries
  2. Human chromosome 16
    Human chromosome 16: entries, gene names and cross-references to MIM
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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