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Protein

39S ribosomal protein L35, mitochondrial

Gene

MRPL35

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_267634. Mitochondrial translation initiation.
REACT_268133. Mitochondrial translation elongation.
REACT_268261. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L35, mitochondrial
Short name:
L35mt
Short name:
MRP-L35
Gene namesi
Name:MRPL35
ORF Names:BM-007
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:14489. MRPL35.

Subcellular locationi

GO - Cellular componenti

  • mitochondrial inner membrane Source: Reactome
  • mitochondrial ribosome Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA30966.

Polymorphism and mutation databases

BioMutaiMRPL35.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini? – 18839S ribosomal protein L35, mitochondrialPRO_0000030525
Transit peptidei1 – ?MitochondrionSequence Analysis

Proteomic databases

MaxQBiQ9NZE8.
PaxDbiQ9NZE8.
PRIDEiQ9NZE8.

PTM databases

PhosphoSiteiQ9NZE8.

Expressioni

Gene expression databases

BgeeiQ9NZE8.
CleanExiHS_MRPL35.
ExpressionAtlasiQ9NZE8. baseline and differential.
GenevestigatoriQ9NZE8.

Organism-specific databases

HPAiHPA043482.

Interactioni

Protein-protein interaction databases

BioGridi119469. 12 interactions.
IntActiQ9NZE8. 1 interaction.
STRINGi9606.ENSP00000338389.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J7Yelectron microscopy3.4031-188[»]
ProteinModelPortaliQ9NZE8.
SMRiQ9NZE8. Positions 94-188.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiNOG288104.
GeneTreeiENSGT00390000007547.
HOGENOMiHOG000293335.
HOVERGENiHBG050017.
InParanoidiQ9NZE8.
KOiK02916.
OMAiNACLSSA.
PhylomeDBiQ9NZE8.
TreeFamiTF317642.

Family and domain databases

InterProiIPR019338. Ribosomal-L35_mit.
IPR021137. Ribosomal_L35.
[Graphical view]
PANTHERiPTHR15909. PTHR15909. 1 hit.
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9NZE8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAASAFAGAV RAASGILRPL NILASSTYRN CVKNASLISA LSTGRFSHIQ
60 70 80 90 100
TPVVSSTPRL TTSERNLTCG HTSVILNRMA PVLPSVLKLP VRSLTYFSAR
110 120 130 140 150
KGKRKTVKAV IDRFLRLHCG LWVRRKAGYK KKLWKKTPAR KKRLREFVFC
160 170 180
NKTQSKLLDK MTTSFWKRRN WYVDDPYQKY HDRTNLKV
Length:188
Mass (Da):21,514
Last modified:January 23, 2007 - v3
Checksum:i3A44076927C5A54B
GO
Isoform 2 (identifier: Q9NZE8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     171-188: Missing.

Show »
Length:170
Mass (Da):19,192
Checksum:iDF3B4AEF300F91D7
GO

Sequence cautioni

The sequence AAF64263.1 differs from that shown. Reason: Frameshift at position 122. Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti19 – 191P → S.1 Publication
Corresponds to variant rs12714176 [ dbSNP | Ensembl ].
VAR_030010
Natural varianti24 – 241A → T.1 Publication
Corresponds to variant rs17851803 [ dbSNP | Ensembl ].
VAR_054632
Natural varianti29 – 291R → H.
Corresponds to variant rs1051949 [ dbSNP | Ensembl ].
VAR_054633
Natural varianti80 – 801A → P.
Corresponds to variant rs34044771 [ dbSNP | Ensembl ].
VAR_034463
Natural varianti81 – 811P → L.
Corresponds to variant rs3192352 [ dbSNP | Ensembl ].
VAR_051803
Natural varianti180 – 1801Y → C.
Corresponds to variant rs1052065 [ dbSNP | Ensembl ].
VAR_054634

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei171 – 18818Missing in isoform 2. 2 PublicationsVSP_036507Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF208849 mRNA. Translation: AAF64263.1. Frameshift.
AK314555 mRNA. Translation: BAG37140.1.
AK314577 mRNA. Translation: BAG37154.1.
AL832982 mRNA. Translation: CAH56349.1.
AC009309 Genomic DNA. No translation available.
BC020651 mRNA. Translation: AAH20651.1.
CCDSiCCDS1987.1. [Q9NZE8-2]
CCDS1988.1. [Q9NZE8-1]
RefSeqiNP_057706.2. NM_016622.3. [Q9NZE8-1]
NP_663619.1. NM_145644.2. [Q9NZE8-2]
UniGeneiHs.433439.

Genome annotation databases

GeneIDi51318.
KEGGihsa:51318.
UCSCiuc002srf.4. human. [Q9NZE8-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF208849 mRNA. Translation: AAF64263.1. Frameshift.
AK314555 mRNA. Translation: BAG37140.1.
AK314577 mRNA. Translation: BAG37154.1.
AL832982 mRNA. Translation: CAH56349.1.
AC009309 Genomic DNA. No translation available.
BC020651 mRNA. Translation: AAH20651.1.
CCDSiCCDS1987.1. [Q9NZE8-2]
CCDS1988.1. [Q9NZE8-1]
RefSeqiNP_057706.2. NM_016622.3. [Q9NZE8-1]
NP_663619.1. NM_145644.2. [Q9NZE8-2]
UniGeneiHs.433439.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J7Yelectron microscopy3.4031-188[»]
ProteinModelPortaliQ9NZE8.
SMRiQ9NZE8. Positions 94-188.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi119469. 12 interactions.
IntActiQ9NZE8. 1 interaction.
STRINGi9606.ENSP00000338389.

PTM databases

PhosphoSiteiQ9NZE8.

Polymorphism and mutation databases

BioMutaiMRPL35.

Proteomic databases

MaxQBiQ9NZE8.
PaxDbiQ9NZE8.
PRIDEiQ9NZE8.

Protocols and materials databases

DNASUi51318.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi51318.
KEGGihsa:51318.
UCSCiuc002srf.4. human. [Q9NZE8-1]

Organism-specific databases

CTDi51318.
GeneCardsiGC02P086426.
HGNCiHGNC:14489. MRPL35.
HPAiHPA043482.
MIMi611841. gene.
neXtProtiNX_Q9NZE8.
PharmGKBiPA30966.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG288104.
GeneTreeiENSGT00390000007547.
HOGENOMiHOG000293335.
HOVERGENiHBG050017.
InParanoidiQ9NZE8.
KOiK02916.
OMAiNACLSSA.
PhylomeDBiQ9NZE8.
TreeFamiTF317642.

Enzyme and pathway databases

ReactomeiREACT_267634. Mitochondrial translation initiation.
REACT_268133. Mitochondrial translation elongation.
REACT_268261. Mitochondrial translation termination.

Miscellaneous databases

ChiTaRSiMRPL35. human.
GenomeRNAii51318.
NextBioi54687.
PROiQ9NZE8.
SOURCEiSearch...

Gene expression databases

BgeeiQ9NZE8.
CleanExiHS_MRPL35.
ExpressionAtlasiQ9NZE8. baseline and differential.
GenevestigatoriQ9NZE8.

Family and domain databases

InterProiIPR019338. Ribosomal-L35_mit.
IPR021137. Ribosomal_L35.
[Graphical view]
PANTHERiPTHR15909. PTHR15909. 1 hit.
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells."
    Zhang Q.-H., Ye M., Wu X.-Y., Ren S.-X., Zhao M., Zhao C.-J., Fu G., Shen Y., Fan H.-Y., Lu G., Zhong M., Xu X.-R., Han Z.-G., Zhang J.-W., Tao J., Huang Q.-H., Zhou J., Hu G.-X.
    , Gu J., Chen S.-J., Chen Z.
    Genome Res. 10:1546-1560(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Bone marrow.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Stomach.
  4. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANTS SER-19 AND THR-24.
    Tissue: Liver.
  6. "The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present."
    Koc E.C., Burkhart W., Blackburn K., Moyer M.B., Schlatzer D.M., Moseley A., Spremulli L.L.
    J. Biol. Chem. 276:43958-43969(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
  7. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRM35_HUMAN
AccessioniPrimary (citable) accession number: Q9NZE8
Secondary accession number(s): A6NKV6
, B2RB93, Q658U7, Q8WWA2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 2, 2004
Last sequence update: January 23, 2007
Last modified: May 27, 2015
This is version 110 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. Ribosomal proteins
    Ribosomal proteins families and list of entries
  7. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.