Reviewed,
UniProtKB/Swiss-Prot Q9NYQ7 (CELR3_HUMAN)
Last modified
June 16, 2009.
Version 86.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Cadherin EGF LAG seven-pass G-type receptor 3 Alternative name(s): Flamingo homolog 1 Short name=hFmi1 Multiple epidermal growth factor-like domains 2 Epidermal growth factor-like 1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 3312 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Receptor that may have an important role in cell/cell signaling during nervous system formation. |
| Subcellular location | |
| Sequence similarities | Belongs to the G-protein coupled receptor 2 family. LN-TM7 subfamily. Contains 9 cadherin domains. Contains 8 EGF-like domains. Contains 1 GPS domain. Contains 1 laminin EGF-like domain. Contains 2 laminin G-like domains. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ABL1 | P00519 | 1 | EBI-308417,EBI-375543 | |
| FYN | P06241 | 1 | EBI-308417,EBI-515315 | |
| GRB2 | P62993 | 1 | EBI-308417,EBI-401755 | |
| NCK1 | P16333 | 1 | EBI-308417,EBI-389883 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NYQ7-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NYQ7-2) The sequence of this isoform differs from the canonical sequence as follows: 2158-2158: G → GLRGAG | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 32 | 32 | Potential | ||||||||
| Chain | 33 – 3312 | 3280 | Cadherin EGF LAG seven-pass G-type receptor 3 | PRO_0000012918 | |||||||
Regions | |||||||||||
| Topological domain | 33 – 2540 | 2508 | Extracellular Potential | ||||||||
| Transmembrane | 2541 – 2561 | 21 | 1 Potential | ||||||||
| Topological domain | 2562 – 2572 | 11 | Cytoplasmic Potential | ||||||||
| Transmembrane | 2573 – 2593 | 21 | 2 Potential | ||||||||
| Topological domain | 2594 – 2601 | 8 | Extracellular Potential | ||||||||
| Transmembrane | 2602 – 2622 | 21 | 3 Potential | ||||||||
| Topological domain | 2623 – 2643 | 21 | Cytoplasmic Potential | ||||||||
| Transmembrane | 2644 – 2664 | 21 | 4 Potential | ||||||||
| Topological domain | 2665 – 2681 | 17 | Extracellular Potential | ||||||||
| Transmembrane | 2682 – 2702 | 21 | 5 Potential | ||||||||
| Topological domain | 2703 – 2725 | 23 | Cytoplasmic Potential | ||||||||
| Transmembrane | 2726 – 2746 | 21 | 6 Potential | ||||||||
| Topological domain | 2747 – 2753 | 7 | Extracellular Potential | ||||||||
| Transmembrane | 2754 – 2774 | 21 | 7 Potential | ||||||||
| Topological domain | 2775 – 3312 | 538 | Cytoplasmic Potential | ||||||||
| Domain | 326 – 433 | 108 | Cadherin 1 | ||||||||
| Domain | 434 – 545 | 112 | Cadherin 2 | ||||||||
| Domain | 546 – 651 | 106 | Cadherin 3 | ||||||||
| Domain | 652 – 756 | 105 | Cadherin 4 | ||||||||
| Domain | 757 – 858 | 102 | Cadherin 5 | ||||||||
| Domain | 859 – 961 | 103 | Cadherin 6 | ||||||||
| Domain | 962 – 1067 | 106 | Cadherin 7 | ||||||||
| Domain | 1068 – 1169 | 102 | Cadherin 8 | ||||||||
| Domain | 1170 – 1265 | 96 | Cadherin 9 | ||||||||
| Domain | 1375 – 1433 | 59 | EGF-like 1; calcium-binding | ||||||||
| Domain | 1435 – 1471 | 37 | EGF-like 2; calcium-binding | ||||||||
| Domain | 1475 – 1514 | 40 | EGF-like 3; calcium-binding | ||||||||
| Domain | 1515 – 1719 | 205 | Laminin G-like 1 | ||||||||
| Domain | 1722 – 1758 | 37 | EGF-like 4; calcium-binding | ||||||||
| Domain | 1764 – 1944 | 181 | Laminin G-like 2 | ||||||||
| Domain | 1946 – 1982 | 37 | EGF-like 5; calcium-binding | ||||||||
| Domain | 1983 – 2020 | 38 | EGF-like 6; calcium-binding | ||||||||
| Domain | 2021 – 2053 | 33 | EGF-like 7; calcium-binding | ||||||||
| Domain | 2055 – 2090 | 36 | EGF-like 8; calcium-binding | ||||||||
| Domain | 2077 – 2124 | 48 | Laminin EGF-like | ||||||||
| Domain | 2477 – 2529 | 53 | GPS | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 1963 | 1 | (3R)-3-hydroxyaspartate Potential | ||||||||
| Glycosylation | 632 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 847 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1182 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1222 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1317 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1327 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1649 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1713 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1770 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2053 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2177 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2196 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2386 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2474 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2506 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 1379 ↔ 1390 | By similarity | |||||||||
| Disulfide bond | 1384 ↔ 1421 | By similarity | |||||||||
| Disulfide bond | 1423 ↔ 1432 | By similarity | |||||||||
| Disulfide bond | 1439 ↔ 1450 | By similarity | |||||||||
| Disulfide bond | 1444 ↔ 1459 | By similarity | |||||||||
| Disulfide bond | 1461 ↔ 1470 | By similarity | |||||||||
| Disulfide bond | 1479 ↔ 1490 | By similarity | |||||||||
| Disulfide bond | 1484 ↔ 1500 | By similarity | |||||||||
| Disulfide bond | 1502 ↔ 1513 | By similarity | |||||||||
| Disulfide bond | 1693 ↔ 1719 | By similarity | |||||||||
| Disulfide bond | 1726 ↔ 1737 | By similarity | |||||||||
| Disulfide bond | 1731 ↔ 1746 | By similarity | |||||||||
| Disulfide bond | 1748 ↔ 1757 | By similarity | |||||||||
| Disulfide bond | 1915 ↔ 1944 | By similarity | |||||||||
| Disulfide bond | 1950 ↔ 1961 | By similarity | |||||||||
| Disulfide bond | 1955 ↔ 1970 | By similarity | |||||||||
| Disulfide bond | 1972 ↔ 1981 | By similarity | |||||||||
| Disulfide bond | 1985 ↔ 1996 | By similarity | |||||||||
| Disulfide bond | 1990 ↔ 2008 | By similarity | |||||||||
| Disulfide bond | 2010 ↔ 2019 | By similarity | |||||||||
| Disulfide bond | 2027 ↔ 2040 | By similarity | |||||||||
| Disulfide bond | 2042 ↔ 2052 | By similarity | |||||||||
| Disulfide bond | 2059 ↔ 2074 | By similarity | |||||||||
| Disulfide bond | 2061 ↔ 2077 | By similarity | |||||||||
| Disulfide bond | 2079 ↔ 2089 | By similarity | |||||||||
| Disulfide bond | 2098 ↔ 2107 | By similarity | |||||||||
| Disulfide bond | 2110 ↔ 2122 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 2158 | 1 | G → GLRGAG in isoform 2. | VSP_037125 | |||||||
| Natural variant | 157 | 1 | A → P: dbSNP rs3733085. | VAR_020022 | |||||||
| Natural variant | 805 | 1 | S → T: dbSNP rs3821875. | VAR_020023 | |||||||
| Natural variant | 1758 | 1 | Q → R: dbSNP rs12107252. | VAR_055101 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 13 | 1 | G → E in AAF61929. Ref.1 | ||||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes." Wu Q., Maniatis T. Proc. Natl. Acad. Sci. U.S.A. 97:3124-3129(2000) [PubMed: 10716726] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [2] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed: 16641997] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | "Identification of high-molecular-weight proteins with multiple EGF-like motifs by motif-trap screening." Nakayama M., Nakajima D., Nagase T., Nomura N., Seki N., Ohara O. Genomics 51:27-34(1998) [PubMed: 9693030] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1954-3312 (ISOFORM 2). Tissue: Brain. |
Cross-references
Sequence databases | |
|---|---|
| AF231023 mRNA. Translation: AAF61929.1. AC121252 Genomic DNA. No translation available. AB011536 mRNA. Translation: BAA32464.1. | |
| IPI | IPI00015345. |
| PIR | T00250. |
| RefSeq | NP_001398.2. |
| UniGene | Hs.631926 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1GK5 based on UniProtKB P01132. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9NYQ7. 18 interactions. |
Protein family/group databases | |
| GPCRDB | Search... |
PTM databases | |
| PhosphoSite | Q9NYQ7. |
Proteomic databases | |
| PRIDE | Q9NYQ7. |
Genome annotation databases | |
| Ensembl | ENSG00000008300. Homo sapiens. [Contig view] |
| GeneID | 1951. |
| KEGG | hsa:1951. |
Organism-specific databases | |
| GeneCards | GC03M048638. |
| H-InvDB | HIX0003291. |
| HGNC | HGNC:3230. CELSR3. |
| MIM | 604264. gene. |
| PharmGKB | PA26395. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | Q9NYQ7. |
Gene expression databases | |
| ArrayExpress | Q9NYQ7. |
| Bgee | Q9NYQ7. |
| CleanEx | HS_CELSR3. |
| GermOnline | ENSG00000008300. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR002126. Cadherin. IPR013320. ConA-like_subgrp. IPR006209. EGF. IPR006210. EGF-like. IPR013032. EGF-like_reg_CS. IPR000152. EGF-type_Asp/Asn_hydroxyl_CS. IPR000742. EGF_3. IPR002049. EGF_laminin. IPR017981. GPCR_2-like. IPR001879. GPCR_2_extracellular. IPR000832. GPCR_2_secretin-like. IPR017983. GPCR_2_secretin-like_CS. IPR001791. Laminin_G. IPR012680. Laminin_G_2. IPR000203. PKD_cys_rich. [Graphical view] |
| Gene3D | G3DSA:2.60.40.60. Cadherin. 8 hits. G3DSA:2.60.120.200. ConA_like_subgrp. 2 hits. |
| Pfam | PF00002. 7tm_2. 1 hit. PF00028. Cadherin. 9 hits. PF00008. EGF. 6 hits. PF01825. GPS. 1 hit. PF02793. HRM. 1 hit. PF00053. Laminin_EGF. 1 hit. PF02210. Laminin_G_2. 2 hits. [Graphical view] |
| PRINTS | PR00205. CADHERIN. |
| SMART | SM00112. CA. 9 hits. SM00181. EGF. 6 hits. SM00180. EGF_Lam. 1 hit. SM00303. GPS. 1 hit. SM00008. HormR. 1 hit. SM00282. LamG. 2 hits. [Graphical view] |
| PROSITE | PS00010. ASX_HYDROXYL. 1 hit. PS00232. CADHERIN_1. 7 hits. PS50268. CADHERIN_2. 8 hits. PS00022. EGF_1. 6 hits. PS01186. EGF_2. 4 hits. PS50026. EGF_3. 6 hits. PS01248. EGF_LAM_1. 1 hit. PS50027. EGF_LAM_2. 1 hit. PS00649. G_PROTEIN_RECEP_F2_1. False negative. PS00650. G_PROTEIN_RECEP_F2_2. 1 hit. PS50227. G_PROTEIN_RECEP_F2_3. 1 hit. PS50261. G_PROTEIN_RECEP_F2_4. 1 hit. PS50221. GPS. 1 hit. PS50025. LAM_G_DOMAIN. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 7907. |
| SOURCE | Search... |
Entry information
| Entry name | CELR3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NYQ7 Secondary accession number(s): O75092 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| 7-transmembrane G-linked receptors List of 7-transmembrane G-linked receptor entries |
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


