Q9NXR8 (ING3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 111.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Inhibitor of growth protein 3 Alternative name(s): p47ING3 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 418 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when directly recruited to sites of DNA damage. Ref.1 Ref.10 |
| Subunit structure | Interacts with H3K4me3 and to a lesser extent with H3K4me2. Component of the NuA4 histone acetyltransferase complex which contains the catalytic subunit KAT5/TIP60 and the subunits EP400, TRRAP/PAF400, BRD8/SMAP, EPC1, DMAP1/DNMAP1, RUVBL1/TIP49, RUVBL2, ING3, actin, ACTL6A/BAF53A, MORF4L1/MRG15, MORF4L2/MRGX, MRGBP, YEATS4/GAS41, VPS72/YL1 and MEAF6. The NuA4 complex interacts with MYC and the adenovirus E1A protein. HTATTIP/TIP60, EPC1, and ING3 together constitute a minimal HAT complex termed Piccolo NuA4. Ref.8 Ref.10 Ref.11 Ref.12 Ref.13 |
| Subcellular location | |
| Tissue specificity | Expressed in brain, heart, kidney, liver, lung, ovaries, placenta, prostate, skeletal muscle, small intestine, spleen, testis and thymus. |
| Domain | The PHD-type zinc finger mediates the binding to H3K4me3. Ref.12 Ref.13 |
| Involvement in disease | Squamous cell carcinoma of the head and neck (HNSCC) [MIM:275355]: A non-melanoma skin cancer affecting the head and neck. The hallmark of cutaneous SCC is malignant transformation of normal epidermal keratinocytes. |
| Sequence similarities | Belongs to the ING family. Contains 1 PHD-type zinc finger. |
| Sequence caution | The sequence AAF28979.1 differs from that shown. Reason: Frameshift at position 90. The sequence AAH73865.1 differs from that shown. Reason: Intron retention. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NXR8-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NXR8-2) The sequence of this isoform differs from the canonical sequence as follows: 90-92: VDR → QHF 93-418: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 3 (identifier: Q9NXR8-3) The sequence of this isoform differs from the canonical sequence as follows: 90-93: VDRH → DLWN 94-418: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||
Molecule processing | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 418 | 418 | Inhibitor of growth protein 3 | PRO_0000212665 | |||||||||||
Regions | |||||||||||||||
| Zinc finger | 360 – 409 | 50 | PHD-type | ||||||||||||
| Compositional bias | 313 – 329 | 17 | Poly-Ser | ||||||||||||
Sites | |||||||||||||||
| Binding site | 362 | 1 | Histone H3K4me3 By similarity | ||||||||||||
| Binding site | 373 | 1 | Histone H3K4me3 By similarity | ||||||||||||
| Binding site | 377 | 1 | Histone H3K4me3 By similarity | ||||||||||||
| Binding site | 385 | 1 | Histone H3K4me3 By similarity | ||||||||||||
Amino acid modifications | |||||||||||||||
| Modified residue | 264 | 1 | N6-acetyllysine Ref.14 | ||||||||||||
Natural variations | |||||||||||||||
| Alternative sequence | 90 – 93 | 4 | VDRH → DLWN in isoform 3. | VSP_012887 | |||||||||||
| Alternative sequence | 90 – 92 | 3 | VDR → QHF in isoform 2. | VSP_012885 | |||||||||||
| Alternative sequence | 93 – 418 | 326 | Missing in isoform 2. | VSP_012886 | |||||||||||
| Alternative sequence | 94 – 418 | 325 | Missing in isoform 3. | VSP_012888 | |||||||||||
| Natural variant | 20 | 1 | D → G in HNSCC. Ref.15 | VAR_021263 | |||||||||||
Experimental info | |||||||||||||||
| Sequence conflict | 325 | 1 | C → S Ref.2 | ||||||||||||
| Sequence conflict | 325 | 1 | C → S Ref.3 | ||||||||||||
| Sequence conflict | 367 | 1 | Q → QV in CAC48260. Ref.5 | ||||||||||||
| Sequence conflict | 380 | 1 | Missing in CAC48260. Ref.5 | ||||||||||||
Secondary structure | |||||||||||||||
Helix Strand Turn | |||||||||||||||
| Beta strand | 371 – 374 | 4 | |||||||||||||
| Helix | 388 – 391 | 4 | |||||||||||||
| Helix | 404 – 414 | 11 | |||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "A novel PHD-finger motif protein, p47ING3, modulates p53-mediated transcription, cell cycle control, and apoptosis." Nagashima M., Shiseki M., Pedeux R.M., Okamura S., Kitahama-Shiseki M., Miura K., Yokota J., Harris C.C. Oncogene 22:343-350(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), ROLE IN P53 MEDIATED GROWTH SUPPRESSION. |
| [2] | "Cloning and characterization of p47ING3, a new member of the p33ING1 family of p53 regulators." Zenklusen J.C., Green E.D. Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3). Tissue: Skeletal muscle. |
| [4] | "Human partial CDS from CD34+ stem cells." Ye M., Zhang Q.-H., Zhou J., Shen Y., Wu X.-Y., Guan Z.Q., Wang L., Fan H.-Y., Mao Y.-F., Dai M., Huang Q.-H., Chen S.-J., Chen Z. Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Umbilical cord blood. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Uterus. |
| [6] | "The DNA sequence of human chromosome 7." Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L. Wilson R.K.Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). Tissue: Blood, Liver, Lung, Pancreas and Urinary bladder. |
| [8] | "Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex." Cai Y., Jin J., Tomomori-Sato C., Sato S., Sorokina I., Parmely T.J., Conaway R.C., Conaway J.W. J. Biol. Chem. 278:42733-42736(2003) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 80-92, IDENTIFICATION IN NUA4 COMPLEX, MASS SPECTROMETRY. |
| [9] | "The highly conserved and multifunctional NuA4 HAT complex." Doyon Y., Cote J. Curr. Opin. Genet. Dev. 14:147-154(2004) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON NUA4 COMPLEX. |
| [10] | "Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans." Doyon Y., Selleck W., Lane W.S., Tan S., Cote J. Mol. Cell. Biol. 24:1884-1896(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN NUA4 COMPLEX. |
| [11] | "ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation." Doyon Y., Cayrou C., Ullah M., Landry A.-J., Cote V., Selleck W., Lane W.S., Tan S., Yang X.-J., Cote J. Mol. Cell 21:51-64(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN NUA4 COMPLEX. |
| [12] | "ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression." Shi X., Hong T., Walter K.L., Ewalt M., Michishita E., Hung T., Carney D., Pena P., Lan F., Kaadige M.R., Lacoste N., Cayrou C., Davrazou F., Saha A., Cairns B.R., Ayer D.E., Kutateladze T.G., Shi Y. Gozani O.Nature 442:96-99(2006) [PubMed] [Europe PMC] [Abstract] Cited for: DOMAIN PHD-TYPE ZINC FINGER, INTERACTION WITH HISTONES H3K4ME3 AND H3K4ME2. |
| [13] | "Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers." Lee W.Y., Lee D., Chung W.I., Kwon C.S. Plant J. 58:511-524(2009) [PubMed] [Europe PMC] [Abstract] Cited for: DOMAIN PHD-TYPE ZINC FINGER, INTERACTION WITH HISTONES H3K4ME3 AND H3K4ME2. |
| [14] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-264, MASS SPECTROMETRY. |
| [15] | "Allelic loss and reduced expression of the ING3, a candidate tumor suppressor gene at 7q31, in human head and neck cancers." Gunduz M., Ouchida M., Fukushima K., Ito S., Jitsumori Y., Nakashima T., Nagai N., Nishizaki K., Shimizu K. Oncogene 21:4462-4470(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT HNSCC GLY-20. |
| [16] | "Solution structure of PHD domain in inhibitor of growth protein 3 (ING3) antigen 7." RIKEN structural genomics initiative (RSGI) Submitted (NOV-2006) to the PDB data bank Cited for: STRUCTURE BY NMR OF 362-418. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF074968 mRNA. Translation: AAG12172.1. AY007790 mRNA. Translation: AAG23285.1. AK000096 mRNA. Translation: BAA90942.1. AK291905 mRNA. Translation: BAF84594.1. AF161419 mRNA. Translation: AAF28979.1. Frameshift. AL603623 Transcribed RNA. Translation: CAC48260.2. AC004537 Genomic DNA. Translation: AAQ93373.1. BC009777 mRNA. Translation: AAH09777.1. BC009777 mRNA. Translation: AAQ93374.1. BC010851 mRNA. Translation: AAH10851.1. BC062634 mRNA. Translation: AAH09776.1. BC062634 mRNA. Translation: AAH62634.1. BC073865 mRNA. Translation: AAH73865.1. Sequence problems. BC093091 mRNA. Translation: AAH93091.1. BC093689 mRNA. Translation: AAH93689.1. BC101609 mRNA. Translation: AAI01610.1. | ||||||||||||
| IPI | IPI00387159. IPI00413787. IPI00478624. | ||||||||||||
| RefSeq | NP_061944.2. NM_019071.2. NP_938008.1. NM_198267.1. | ||||||||||||
| UniGene | Hs.489811. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q9NXR8. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q9NXR8. 4 interactions. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9NXR8. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 59798432. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q9NXR8. | ||||||||||||
| PRIDE | Q9NXR8. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 54556. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000315870; ENSP00000320566; ENSG00000071243. ENST00000339121; ENSP00000341697; ENSG00000071243. ENST00000427726; ENSP00000410406; ENSG00000071243. ENST00000445699; ENSP00000395719; ENSG00000071243. | ||||||||||||
| GeneID | 54556. | ||||||||||||
| KEGG | hsa:54556. | ||||||||||||
| UCSC | uc003vjm.1. human. uc003vjn.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 54556. | ||||||||||||
| GeneCards | GC07P120590. | ||||||||||||
| HGNC | HGNC:14587. ING3. | ||||||||||||
| MIM | 275355. phenotype. 607493. gene. | ||||||||||||
| neXtProt | NX_Q9NXR8. | ||||||||||||
| Orphanet | 67037. Squamous cell carcinoma of head and neck. | ||||||||||||
| PharmGKB | PA29875. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG5034. | ||||||||||||
| HOVERGEN | HBG006607. | ||||||||||||
| InParanoid | Q9NXR8. | ||||||||||||
| KO | K11319. | ||||||||||||
| OMA | NNQVDWT. | ||||||||||||
| OrthoDB | EOG4H19WB. | ||||||||||||
| PhylomeDB | Q9NXR8. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q9NXR8. | ||||||||||||
| Bgee | Q9NXR8. | ||||||||||||
| CleanEx | HS_ING3. | ||||||||||||
| Genevestigator | Q9NXR8. | ||||||||||||
| GermOnline | ENSG00000071243. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.40.10. 1 hit. | ||||||||||||
| InterPro | IPR024610. ING_N. IPR019786. Zinc_finger_PHD-type_CS. IPR011011. Znf_FYVE_PHD. IPR001965. Znf_PHD. IPR019787. Znf_PHD-finger. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||
| Pfam | PF12998. ING. 1 hit. PF00628. PHD. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00249. PHD. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF57903. FYVE_PHD_ZnF. 1 hit. | ||||||||||||
| PROSITE | PS01359. ZF_PHD_1. 1 hit. PS50016. ZF_PHD_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | ING3. human. | ||||||||||||
| EvolutionaryTrace | Q9NXR8. | ||||||||||||
| GenomeRNAi | 54556. | ||||||||||||
| NextBio | 57036. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | ING3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NXR8 Secondary accession number(s): A8K790 Q9P081 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
