Q9NXR1 (NDE1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 81.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Nuclear distribution protein nudE homolog 1 Short name=NudE | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 346 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Required for centrosome duplication and formation and function of the mitotic spindle. Essential for the development of the cerebral cortex. May regulate the production of neurons by controlling the orientation of the mitotic spindle during division of cortical neuronal progenitors of the proliferative ventricular zone of the brain. Orientation of the division plane perpendicular to the layers of the cortex gives rise to two proliferative neuronal progenitors whereas parallel orientation of the division plane yields one proliferative neuronal progenitor and a post-mitotic neuron. A premature shift towards a neuronal fate within the progenitor population may result in an overall reduction in the final number of neurons and an increase in the number of neurons in the deeper layers of the cortex. Ref.9 Ref.16 |
| Subunit structure | Self-associates. Interacts with CEP110, LIS1, dynein, SLMAP and TCP1 By similarity. Interacts with CENPF, dynactin, tubulin gamma, PAFAH1B1, PCM1 and PCNT. Interacts with ZNF365. Ref.6 Ref.8 Ref.9 |
| Subcellular location | Cytoplasm › cytoskeleton. Cytoplasm › cytoskeleton › centrosome. Chromosome › centromere › kinetochore. Cytoplasm › cytoskeleton › spindle. Cleavage furrow. Note: Localizes to the interphase and S phase centrosome. During mitosis, partially associated with the mitotic spindle. Concentrates at the plus ends of microtubules coincident with kinetochores in metaphase and anaphase in a CENPF-dependent manner. Also localizes to the cleavage furrow during cytokinesis. manner. Also localizes to the cleavage furrow during cytokinesis. Ref.4 Ref.8 Ref.9 Ref.16 |
| Tissue specificity | Expressed in the neuroepithelium throughout the developing brain, including the cerebral cortex and cerebellum. Ref.16 |
| Post-translational modification | Phosphorylated in mitosis. Phosphorylated in vitro by CDC2. Phosphorylation at Thr-246 is essential for the G2/M transition By similarity. Ref.4 Ref.5 Ref.7 Ref.8 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 |
| Involvement in disease | Defects in NDE1 are the cause of lissencephaly type 4 (LIS4) [MIM:614019]. A neurodevelopmental disorder characterized by lissencephaly, severe brain atrophy, extreme microcephaly, and profound mental retardation. Ref.16 Ref.17 |
| Sequence similarities | Belongs to the nudE family. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ZNF365 | Q70YC5 | 4 | EBI-941227,EBI-941182 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NXR1-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NXR1-2) The sequence of this isoform differs from the canonical sequence as follows: 318-346: GKRLEFGKPPSHMSSSPLPSAQGVVKMLL → DTSCRWLSKSTTRSSSSC |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 346 | 346 | Nuclear distribution protein nudE homolog 1 | PRO_0000240202 | |||||
Regions | |||||||||
| Region | 1 – 93 | 93 | Self-association By similarity | ||||||
| Region | 88 – 156 | 69 | Interaction with PAFAH1B1 By similarity | ||||||
| Region | 167 – 290 | 124 | Interaction with CENPF By similarity | ||||||
| Coiled coil | 18 – 188 | 171 | Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 211 | 1 | Phosphoserine Ref.11 Ref.13 | ||||||
| Modified residue | 215 | 1 | Phosphothreonine Ref.11 Ref.13 | ||||||
| Modified residue | 228 | 1 | Phosphothreonine Ref.11 Ref.13 | ||||||
| Modified residue | 231 | 1 | Phosphoserine Ref.13 | ||||||
| Modified residue | 239 | 1 | Phosphoserine Ref.13 | ||||||
| Modified residue | 240 | 1 | Phosphothreonine Ref.13 | ||||||
| Modified residue | 243 | 1 | Phosphothreonine Ref.13 | ||||||
| Modified residue | 246 | 1 | Phosphothreonine Ref.13 | ||||||
| Modified residue | 279 | 1 | Phosphotyrosine Ref.5 | ||||||
| Modified residue | 282 | 1 | Phosphoserine Ref.7 Ref.12 Ref.13 Ref.14 | ||||||
| Modified residue | 306 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 307 | 1 | Phosphoserine Ref.10 | ||||||
| Lipidation | 274 | 1 | S-palmitoyl cysteine; by ZDHHC2, ZDHHC3 and ZDHHC7 Ref.15 | ||||||
Natural variations | |||||||||
| Alternative sequence | 318 – 346 | 29 | GKRLE…VKMLL → DTSCRWLSKSTTRSSSSC in isoform 2. | VSP_019305 | |||||
Experimental info | |||||||||
| Mutagenesis | 191 | 1 | T → E: Loss of centrosomal localization and reduced ZNF365-binding; when associated with E-215; E-228; E-243; E-246 and E-282. Ref.8 | ||||||
| Mutagenesis | 191 | 1 | T → V: Retained on spindle poles during mitosis, no loss of phosphorylation in vivo and increased ZNF365-binding; when associated with V-215; V-228; V-243; V-246 and A-282. Ref.8 | ||||||
| Mutagenesis | 215 | 1 | T → E: Loss of centrosomal localization and reduced ZNF365-binding; when associated with E-191; E-228; E-243; E-246 and E-282. Ref.8 | ||||||
| Mutagenesis | 215 | 1 | T → V: Retained on spindle poles during mitosis, no loss of phosphorylation in vivo and increased ZNF365-binding; when associated with V-191; V-228; V-243; V-246 and A-282. Ref.8 | ||||||
| Mutagenesis | 228 | 1 | T → E: Loss of centrosomal localization and reduced ZNF365-binding; when associated with E-191; E-215; E-243; E-246 and E-282. Ref.8 | ||||||
| Mutagenesis | 228 | 1 | T → V: Retained on spindle poles during mitosis, no loss of phosphorylation in vivo and increased ZNF365-binding; when associated with V-191; V-215; V-243; V-246 and A-282. Ref.8 | ||||||
| Mutagenesis | 243 | 1 | T → E: Loss of centrosomal localization and reduced ZNF365-binding; when associated with E-191; E-215; E-228; E-246 and E-282. Ref.8 | ||||||
| Mutagenesis | 243 | 1 | T → V: Retained on spindle poles during mitosis, no loss of phosphorylation in vivo and increased ZNF365-binding; when associated with V-191; V-215; V-228; V-246 and A-282. Ref.8 | ||||||
| Mutagenesis | 246 | 1 | T → E: Loss of centrosomal localization and reduced ZNF365-binding; when associated with E-191; E-215; E-228; E-243 and E-282. Ref.8 | ||||||
| Mutagenesis | 246 | 1 | T → V: Retained on spindle poles during mitosis, no loss of phosphorylation in vivo and increased ZNF365-binding; when associated with V-191; V-215; V-228; V-243 and A-282. Ref.8 | ||||||
| Mutagenesis | 282 | 1 | S → A: Retained on spindle poles during mitosis, no loss of phosphorylation in vivo and increased ZNF365-binding; when associated with V-191; V-215; V-228; V-243 and V-246. Ref.8 | ||||||
| Mutagenesis | 282 | 1 | S → E: Loss of centrosomal localization and reduced ZNF365-binding; when associated with E-191; E-215; E-228; E-243 and E-246. Ref.8 | ||||||
| Sequence conflict | 191 | 1 | T → I in AAH33900. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Colon. |
| [2] | "The sequence and analysis of duplication-rich human chromosome 16." Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J. Pennacchio L.A.Nature 432:988-994(2004) [PubMed: 15616553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Placenta and Testis. |
| [4] | "Human Nudel and NudE as regulators of cytoplasmic dynein in poleward protein transport along the mitotic spindle." Yan X., Li F., Liang Y., Shen Y., Zhao X., Huang Q., Zhu X. Mol. Cell. Biol. 23:1239-1250(2003) [PubMed: 12556484] [Abstract] Cited for: SUBCELLULAR LOCATION, PHOSPHORYLATION. |
| [5] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-279, MASS SPECTROMETRY. |
| [6] | "Nudel contributes to microtubule anchoring at the mother centriole and is involved in both dynein-dependent and -independent centrosomal protein assembly." Guo J., Yang Z., Song W., Chen Q., Wang F., Zhang Q., Zhu X. Mol. Biol. Cell 17:680-689(2006) [PubMed: 16291865] [Abstract] Cited for: INTERACTION WITH DYNACTIN; TUBULIN GAMMA; PAFAH1B1; PCM1 AND PCNT. |
| [7] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-282, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Centrosomal proteins Nde1 and Su48 form a complex regulated by phosphorylation." Hirohashi Y., Wang Q., Liu Q., Li B., Du X., Zhang H., Furuuchi K., Masuda K., Sato N., Greene M.I. Oncogene 25:6048-6055(2006) [PubMed: 16682949] [Abstract] Cited for: INTERACTION WITH ZNF365, SUBCELLULAR LOCATION, PHOSPHORYLATION, MUTAGENESIS OF THR-191; THR-215; THR-228; THR-243; THR-246 AND SER-282. |
| [9] | "Cenp-F links kinetochores to Ndel1/Nde1/Lis1/dynein microtubule motor complexes." Vergnolle M.A.S., Taylor S.S. Curr. Biol. 17:1173-1179(2007) [PubMed: 17600710] [Abstract] Cited for: FUNCTION, INTERACTION WITH CENPF, SUBCELLULAR LOCATION. |
| [10] | "Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry." Molina H., Horn D.M., Tang N., Mathivanan S., Pandey A. Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007) [PubMed: 17287340] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-306 AND SER-307, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [11] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-211; THR-215 AND THR-228, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-282, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-211; THR-215; THR-228; SER-231; SER-239; THR-240; THR-243; THR-246 AND SER-282, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-282, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [15] | "Ndel1 palmitoylation: a new mean to regulate cytoplasmic dynein activity." Shmueli A., Segal M., Sapir T., Tsutsumi R., Noritake J., Bar A., Sapoznik S., Fukata Y., Orr I., Fukata M., Reiner O. EMBO J. 29:107-119(2010) [PubMed: 19927128] [Abstract] Cited for: PALMITOYLATION AT CYS-274 BY ZDHHC2; ZDHHC3 AND ZDHHC7. |
| [16] | "The essential role of centrosomal NDE1 in human cerebral cortex neurogenesis." Bakircioglu M., Carvalho O.P., Khurshid M., Cox J.J., Tuysuz B., Barak T., Yilmaz S., Caglayan O., Dincer A., Nicholas A.K., Quarrell O., Springell K., Karbani G., Malik S., Gannon C., Sheridan E., Crosier M., Lisgo S.N. Woods C.G.Am. J. Hum. Genet. 88:523-535(2011) [PubMed: 21529752] [Abstract] Cited for: FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INVOLVEMENT IN LIS4. |
| [17] | "Human mutations in NDE1 cause extreme microcephaly with lissencephaly." Alkuraya F.S., Cai X., Emery C., Mochida G.H., Al-Dosari M.S., Felie J.M., Hill R.S., Barry B.J., Partlow J.N., Gascon G.G., Kentab A., Jan M., Shaheen R., Feng Y., Walsh C.A. Am. J. Hum. Genet. 88:536-547(2011) [PubMed: 21529751] [Abstract] Cited for: INVOLVEMENT IN LIS4. |
| [18] | Erratum Alkuraya F.S., Cai X., Emery C., Mochida G.H., Al-Dosari M.S., Felie J.M., Hill R.S., Barry B.J., Partlow J.N., Gascon G.G., Kentab A., Jan M., Shaheen R., Feng Y., Walsh C.A. Am. J. Hum. Genet. 88:677-677(2011) |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK000108 mRNA. Translation: BAA90949.1. AC026401 Genomic DNA. No translation available. AF001548 Genomic DNA. No translation available. BC001421 mRNA. Translation: AAH01421.1. BC033900 mRNA. Translation: AAH33900.1. |
| IPI | IPI00014893. IPI00759601. |
| RefSeq | NP_001137451.1. NM_001143979.1. NP_060138.1. NM_017668.2. |
| UniGene | Hs.655378. |
3D structure databases | |
| ProteinModelPortal | Q9NXR1. |
| SMR | Q9NXR1. Positions 8-167. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9NXR1. 6 interactions. |
| MINT | MINT-2819594. |
| STRING | Q9NXR1. |
PTM databases | |
| PhosphoSite | Q9NXR1. |
Polymorphism databases | |
| DMDM | 108860813. |
Proteomic databases | |
| PRIDE | Q9NXR1. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000396353; ENSP00000379641; ENSG00000072864. |
| GeneID | 54820. |
| KEGG | hsa:54820. |
| UCSC | uc002dds.1. human. |
Organism-specific databases | |
| CTD | 54820. |
| GeneCards | GC16P015739. |
| HGNC | HGNC:17619. NDE1. |
| HPA | HPA018536. HPA024075. |
| MIM | 609449. gene. 614019. phenotype. |
| neXtProt | NX_Q9NXR1. |
| PharmGKB | PA128394673. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG19210. |
| GeneTree | ENSGT00390000000111. |
| HOGENOM | HBG505908. |
| HOVERGEN | HBG082010. |
| OMA | KNRDGGD. |
| PhylomeDB | Q9NXR1. |
Enzyme and pathway databases | |
| Reactome | REACT_152. Cell Cycle, Mitotic. REACT_383. DNA Replication. |
Gene expression databases | |
| ArrayExpress | Q9NXR1. |
| Bgee | Q9NXR1. |
| CleanEx | HS_NDE1. |
| Genevestigator | Q9NXR1. |
| GermOnline | ENSG00000072864. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR006964. NUDE_C. [Graphical view] |
| Pfam | PF04880. NUDE_C. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 57569. |
| SOURCE | Search... |
Entry information
| Entry name | NDE1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NXR1 Secondary accession number(s): Q49AQ2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with