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Protein

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

Gene

NDUFB11

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Respiratory chain, Transport

Enzyme and pathway databases

ReactomeiR-HSA-611105. Respiratory electron transport.
R-HSA-6799198. Complex I biogenesis.

Names & Taxonomyi

Protein namesi
Recommended name:
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Alternative name(s):
Complex I-ESSS
Short name:
CI-ESSS
NADH-ubiquinone oxidoreductase ESSS subunit
Neuronal protein 17.3
Short name:
Np17.3
Short name:
p17.3
Gene namesi
Name:NDUFB11
ORF Names:UNQ111/PRO1064
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome X

Organism-specific databases

HGNCiHGNC:20372. NDUFB11.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei89 – 10921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

Pathology & Biotechi

Involvement in diseasei

Linear skin defects with multiple congenital anomalies 3 (LSDMCA3)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA disorder characterized by dermal, ocular, neurological and cardiac abnormalities. LSDMCA3 clinical features include linear skin defects on face and neck at birth, lacrimal duct atresia, myopia, nystagmus, strabismus, cardiomyopathy, axial hypotonia, seizures, corpus callosum agenesis, and dilation of lateral ventricles.
See also OMIM:300952

Keywords - Diseasei

Cardiomyopathy

Organism-specific databases

MIMi300952. phenotype.
PharmGKBiPA134924203.

Chemistry

ChEMBLiCHEMBL2363065.

Polymorphism and mutation databases

BioMutaiNDUFB11.
DMDMi32469787.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 2929MitochondrionBy similarityAdd
BLAST
Chaini30 – 153124NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialPRO_0000020057Add
BLAST

Proteomic databases

EPDiQ9NX14.
MaxQBiQ9NX14.
PRIDEiQ9NX14.
TopDownProteomicsiQ9NX14-1. [Q9NX14-1]
Q9NX14-2. [Q9NX14-2]

PTM databases

iPTMnetiQ9NX14.
PhosphoSiteiQ9NX14.

Expressioni

Tissue specificityi

Ubiquitous.

Gene expression databases

BgeeiQ9NX14.
CleanExiHS_NDUFB11.
GenevisibleiQ9NX14. HS.

Organism-specific databases

HPAiHPA030367.

Interactioni

Subunit structurei

Complex I is composed of 45 different subunits.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
FATE1Q969F03EBI-1246182,EBI-743099

Protein-protein interaction databases

BioGridi120026. 60 interactions.
IntActiQ9NX14. 20 interactions.
MINTiMINT-8247572.

Structurei

3D structure databases

ProteinModelPortaliQ9NX14.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I NDUFB11 subunit family.Curated

Keywords - Domaini

Transit peptide, Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00390000003022.
HOGENOMiHOG000049196.
HOVERGENiHBG004073.
InParanoidiQ9NX14.
KOiK11351.
OMAiRMQEWAR.
OrthoDBiEOG7X9G93.
PhylomeDBiQ9NX14.
TreeFamiTF314671.

Family and domain databases

InterProiIPR019329. NADH_UbQ_OxRdtase_ESSS_su.
[Graphical view]
PfamiPF10183. ESSS. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9NX14-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAAGLFGLSA RRLLAAAATR GLPAARVRWE SSFSRTVVAP SAVAGKRPPE
60 70 80 90 100
PTTPWQEDPE PEDENLYEKN PDSHGYDKDP VLDVWNMRLV FFFGVSIILV
110 120 130 140 150
LGSTFVAYLP DYRMKEWSRR EAERLVKYRE ANGLPIMESN CFDPSKIQLP

EDE
Length:153
Mass (Da):17,317
Last modified:October 1, 2000 - v1
Checksum:i2AF8FDD248A86C41
GO
Isoform 2 (identifier: Q9NX14-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     113-113: R → RCTGCPRAWDG

Show »
Length:163
Mass (Da):18,364
Checksum:iCB68F0B548056873
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti13 – 131L → P in AAL32064 (PubMed:10544803).Curated
Sequence conflicti153 – 1531E → D in CAG33520 (Ref. 5) Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei113 – 1131R → RCTGCPRAWDG in isoform 2. 2 PublicationsVSP_018251

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF044213 mRNA. Translation: AAL32064.1.
AF251063 mRNA. Translation: AAK34953.1.
AK000501 mRNA. Translation: BAA91208.1.
AY359056 mRNA. Translation: AAQ89415.1.
CR457239 mRNA. Translation: CAG33520.1.
AL513366 Genomic DNA. Translation: CAI41699.1.
AL513366 Genomic DNA. Translation: CAI41698.1.
BC010665 mRNA. Translation: AAH10665.1.
BC107805 mRNA. Translation: AAI07806.1.
CCDSiCCDS14273.1. [Q9NX14-2]
CCDS48100.1. [Q9NX14-1]
RefSeqiNP_001129470.1. NM_001135998.2. [Q9NX14-1]
NP_061929.2. NM_019056.6. [Q9NX14-2]
UniGeneiHs.521969.

Genome annotation databases

EnsembliENST00000276062; ENSP00000276062; ENSG00000147123. [Q9NX14-2]
ENST00000377811; ENSP00000367042; ENSG00000147123. [Q9NX14-1]
GeneIDi54539.
KEGGihsa:54539.
UCSCiuc004dhc.4. human. [Q9NX14-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF044213 mRNA. Translation: AAL32064.1.
AF251063 mRNA. Translation: AAK34953.1.
AK000501 mRNA. Translation: BAA91208.1.
AY359056 mRNA. Translation: AAQ89415.1.
CR457239 mRNA. Translation: CAG33520.1.
AL513366 Genomic DNA. Translation: CAI41699.1.
AL513366 Genomic DNA. Translation: CAI41698.1.
BC010665 mRNA. Translation: AAH10665.1.
BC107805 mRNA. Translation: AAI07806.1.
CCDSiCCDS14273.1. [Q9NX14-2]
CCDS48100.1. [Q9NX14-1]
RefSeqiNP_001129470.1. NM_001135998.2. [Q9NX14-1]
NP_061929.2. NM_019056.6. [Q9NX14-2]
UniGeneiHs.521969.

3D structure databases

ProteinModelPortaliQ9NX14.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi120026. 60 interactions.
IntActiQ9NX14. 20 interactions.
MINTiMINT-8247572.

Chemistry

ChEMBLiCHEMBL2363065.

PTM databases

iPTMnetiQ9NX14.
PhosphoSiteiQ9NX14.

Polymorphism and mutation databases

BioMutaiNDUFB11.
DMDMi32469787.

Proteomic databases

EPDiQ9NX14.
MaxQBiQ9NX14.
PRIDEiQ9NX14.
TopDownProteomicsiQ9NX14-1. [Q9NX14-1]
Q9NX14-2. [Q9NX14-2]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000276062; ENSP00000276062; ENSG00000147123. [Q9NX14-2]
ENST00000377811; ENSP00000367042; ENSG00000147123. [Q9NX14-1]
GeneIDi54539.
KEGGihsa:54539.
UCSCiuc004dhc.4. human. [Q9NX14-1]

Organism-specific databases

CTDi54539.
GeneCardsiNDUFB11.
HGNCiHGNC:20372. NDUFB11.
HPAiHPA030367.
MIMi300403. gene.
300952. phenotype.
neXtProtiNX_Q9NX14.
PharmGKBiPA134924203.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00390000003022.
HOGENOMiHOG000049196.
HOVERGENiHBG004073.
InParanoidiQ9NX14.
KOiK11351.
OMAiRMQEWAR.
OrthoDBiEOG7X9G93.
PhylomeDBiQ9NX14.
TreeFamiTF314671.

Enzyme and pathway databases

ReactomeiR-HSA-611105. Respiratory electron transport.
R-HSA-6799198. Complex I biogenesis.

Miscellaneous databases

ChiTaRSiNDUFB11. human.
GeneWikiiNDUFB11.
GenomeRNAii54539.
NextBioi56974.
PROiQ9NX14.
SOURCEiSearch...

Gene expression databases

BgeeiQ9NX14.
CleanExiHS_NDUFB11.
GenevisibleiQ9NX14. HS.

Family and domain databases

InterProiIPR019329. NADH_UbQ_OxRdtase_ESSS_su.
[Graphical view]
PfamiPF10183. ESSS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and tissue expressional characterization of a full-length cDNA encoding human neuronal protein P17.3."
    Cui Y., Yu L., Gong R., Zhang M., Fan Y., Yue P., Zhao S.
    Biochem. Genet. 37:175-185(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    Tissue: Fetal brain.
  2. Mao Y., Xie Y., Zhou Z., Zhao W., Zhao S., Wang W., Huang Y., Wang S., Tang R., Chen X., Wu C.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  5. "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
    Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  6. "The DNA sequence of the human X chromosome."
    Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C.
    , Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.
    Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Eye.
  8. "The subunit composition of the human NADH dehydrogenase obtained by rapid one-step immunopurification."
    Murray J., Zhang B., Taylor S.W., Oglesbee D., Fahy E., Marusich M.F., Ghosh S.S., Capaldi R.A.
    J. Biol. Chem. 278:13619-13622(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE NADH-UBIQUINONE OXIDOREDUCTASE COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.
  9. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  10. "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome."
    Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.
    J. Proteomics 96:253-262(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  11. "Mutations in NDUFB11, encoding a complex I component of the mitochondrial respiratory chain, cause microphthalmia with linear skin defects syndrome."
    van Rahden V.A., Fernandez-Vizarra E., Alawi M., Brand K., Fellmann F., Horn D., Zeviani M., Kutsche K.
    Am. J. Hum. Genet. 96:640-650(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: INVOLVEMENT IN LSDMCA3.
  12. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiNDUBB_HUMAN
AccessioniPrimary (citable) accession number: Q9NX14
Secondary accession number(s): Q5JRR3
, Q5JRR4, Q6IAB6, Q8WZ96, Q9BXX9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 3, 2003
Last sequence update: October 1, 2000
Last modified: April 13, 2016
This is version 128 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome X
    Human chromosome X: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.