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Protein

Uncharacterized protein C1orf109

Gene

C1orf109

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C1orf109
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:26039. C1orf109.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142672493.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 203203Uncharacterized protein C1orf109PRO_0000274382Add
BLAST

Proteomic databases

MaxQBiQ9NX04.
PaxDbiQ9NX04.
PRIDEiQ9NX04.

PTM databases

PhosphoSiteiQ9NX04.

Expressioni

Gene expression databases

BgeeiQ9NX04.
CleanExiHS_C1orf109.
ExpressionAtlasiQ9NX04. baseline and differential.
GenevestigatoriQ9NX04.

Organism-specific databases

HPAiHPA027110.
HPA027127.

Interactioni

Protein-protein interaction databases

BioGridi120293. 45 interactions.
IntActiQ9NX04. 4 interactions.
STRINGi9606.ENSP00000350704.

Structurei

3D structure databases

ProteinModelPortaliQ9NX04.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG45850.
GeneTreeiENSGT00390000008551.
HOVERGENiHBG080964.
InParanoidiQ9NX04.
OMAiCFPVVEE.
OrthoDBiEOG7VDXQS.
PhylomeDBiQ9NX04.
TreeFamiTF332524.

Family and domain databases

InterProiIPR029159. CK2S.
[Graphical view]
PfamiPF15011. CK2S. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q9NX04-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTQDRPLLAV QEALKKCFPV VEEQQGLWQS ALRDCQPLLS SLSNLAEQLQ
60 70 80 90 100
AAQNLRFEDV PALRAFPDLK ERLRRKQLVA GDIVLDKLGE RLAILLKVRD
110 120 130 140 150
MVSSHVERVF QIYEQHADTV GIDAVLQPSA VSPSVADMLE WLQDIERHYR
160 170 180 190 200
KSYLKRKYLL SSIQWGDLAN IQALPKAWDR ISKDEHQDLV QDILLNVSFF

LEE
Length:203
Mass (Da):23,373
Last modified:October 1, 2000 - v1
Checksum:iCBD3883CB1A2C281
GO
Isoform 2 (identifier: Q9NX04-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     75-113: RKQLVAGDIV...SHVERVFQIY → QPSSSRCETW...ALMLSCSLQQ
     114-203: Missing.

Show »
Length:113
Mass (Da):12,861
Checksum:iC243446688C8499F
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei75 – 11339RKQLV…VFQIY → QPSSSRCETWSAAMWSECFR SMSNTQTQLALMLSCSLQQ in isoform 2. 1 PublicationVSP_022733Add
BLAST
Alternative sequencei114 – 20390Missing in isoform 2. 1 PublicationVSP_022734Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK000515 mRNA. Translation: BAA91221.1.
CH471059 Genomic DNA. Translation: EAX07327.1.
CH471059 Genomic DNA. Translation: EAX07329.1.
CH471059 Genomic DNA. Translation: EAX07330.1.
BC018109 mRNA. Translation: AAH18109.1.
BC063843 mRNA. Translation: AAH63843.1.
CCDSiCCDS423.1. [Q9NX04-1]
RefSeqiNP_060320.1. NM_017850.1. [Q9NX04-1]
UniGeneiHs.272673.

Genome annotation databases

EnsembliENST00000358011; ENSP00000350704; ENSG00000116922. [Q9NX04-1]
ENST00000464085; ENSP00000477159; ENSG00000116922. [Q9NX04-1]
ENST00000494120; ENSP00000477273; ENSG00000116922. [Q9NX04-2]
GeneIDi54955.
KEGGihsa:54955.
UCSCiuc001cbp.3. human. [Q9NX04-1]
uc001cbq.1. human. [Q9NX04-2]

Polymorphism databases

DMDMi74761780.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK000515 mRNA. Translation: BAA91221.1.
CH471059 Genomic DNA. Translation: EAX07327.1.
CH471059 Genomic DNA. Translation: EAX07329.1.
CH471059 Genomic DNA. Translation: EAX07330.1.
BC018109 mRNA. Translation: AAH18109.1.
BC063843 mRNA. Translation: AAH63843.1.
CCDSiCCDS423.1. [Q9NX04-1]
RefSeqiNP_060320.1. NM_017850.1. [Q9NX04-1]
UniGeneiHs.272673.

3D structure databases

ProteinModelPortaliQ9NX04.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi120293. 45 interactions.
IntActiQ9NX04. 4 interactions.
STRINGi9606.ENSP00000350704.

PTM databases

PhosphoSiteiQ9NX04.

Polymorphism databases

DMDMi74761780.

Proteomic databases

MaxQBiQ9NX04.
PaxDbiQ9NX04.
PRIDEiQ9NX04.

Protocols and materials databases

DNASUi54955.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000358011; ENSP00000350704; ENSG00000116922. [Q9NX04-1]
ENST00000464085; ENSP00000477159; ENSG00000116922. [Q9NX04-1]
ENST00000494120; ENSP00000477273; ENSG00000116922. [Q9NX04-2]
GeneIDi54955.
KEGGihsa:54955.
UCSCiuc001cbp.3. human. [Q9NX04-1]
uc001cbq.1. human. [Q9NX04-2]

Organism-specific databases

CTDi54955.
GeneCardsiGC01M038147.
HGNCiHGNC:26039. C1orf109.
HPAiHPA027110.
HPA027127.
MIMi614799. gene.
neXtProtiNX_Q9NX04.
PharmGKBiPA142672493.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG45850.
GeneTreeiENSGT00390000008551.
HOVERGENiHBG080964.
InParanoidiQ9NX04.
OMAiCFPVVEE.
OrthoDBiEOG7VDXQS.
PhylomeDBiQ9NX04.
TreeFamiTF332524.

Miscellaneous databases

GeneWikiiC1orf109_(gene).
GenomeRNAii54955.
NextBioi58140.
SOURCEiSearch...

Gene expression databases

BgeeiQ9NX04.
CleanExiHS_C1orf109.
ExpressionAtlasiQ9NX04. baseline and differential.
GenevestigatoriQ9NX04.

Family and domain databases

InterProiIPR029159. CK2S.
[Graphical view]
PfamiPF15011. CK2S. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Uterus.

Entry informationi

Entry nameiCA109_HUMAN
AccessioniPrimary (citable) accession number: Q9NX04
Secondary accession number(s): D3DPT1, Q8WVD1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: October 1, 2000
Last modified: February 4, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.