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Q9NWW7

- CB042_HUMAN

UniProt

Q9NWW7 - CB042_HUMAN

Protein

Uncharacterized protein C2orf42

Gene

C2orf42

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 94 (09 Jul 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein C2orf42
    Gene namesi
    Name:C2orf42
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 2

    Organism-specific databases

    HGNCiHGNC:26056. C2orf42.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA147358740.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 574574Uncharacterized protein C2orf42PRO_0000300121Add
    BLAST

    Proteomic databases

    MaxQBiQ9NWW7.
    PaxDbiQ9NWW7.
    PRIDEiQ9NWW7.

    PTM databases

    PhosphoSiteiQ9NWW7.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9NWW7.
    BgeeiQ9NWW7.
    GenevestigatoriQ9NWW7.

    Organism-specific databases

    HPAiHPA031841.
    HPA031842.

    Interactioni

    Protein-protein interaction databases

    BioGridi120316. 2 interactions.
    IntActiQ9NWW7. 2 interactions.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9NWW7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG82445.
    HOGENOMiHOG000060318.
    HOVERGENiHBG100869.
    InParanoidiQ9NWW7.
    OMAiVENQCQH.
    OrthoDBiEOG7N8ZW0.
    PhylomeDBiQ9NWW7.
    TreeFamiTF323774.

    Family and domain databases

    InterProiIPR026049. C2orf42.
    IPR029269. Zf-tcix.
    [Graphical view]
    PANTHERiPTHR13518. PTHR13518. 1 hit.
    PfamiPF14952. zf-tcix. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9NWW7-1 [UniParc]FASTAAdd to Basket

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    MEPNSLRTKV PAFLSDLGKA TLRGIRKCPR CGTYNGTRGL SCKNKTCGTI    50
    FRYGARKQPS VEAVKIITGS DLQVYSVRQR DRGPDYRCFV ELGVSETTIQ 100
    TVDGTIITQL SSGRCYVPSC LKAATQGVVE NQCQHIKLAV NCQAEATPLT 150
    LKSSVLNAMQ ASPETKQTIW QLATEPTGPL VQRITKNILV VKCKASQKHS 200
    LGYLHTSFVQ KVSGKSLPER RFFCSCQTLK SHKSNASKDE TAQRCIHFFA 250
    CICAFASDET LAQEFSDFLN FDSSGLKEII VPQLGCHSES TVSACESTAS 300
    KSKKRRKDEV SGAQMNSSLL PQDAVSSNLR KSGLKKPVVA SSLKRQACGQ 350
    LLDEAQVTLS FQDWLASVTE RIHQTMHYQF DGKPEPLVFH IPQSFFDALQ 400
    QRISIGSAKK RLPNSTTAFV RKDALPLGTF SKYTWHITNI LQVKQILDTP 450
    EMPLEITRSF IQNRDGTYEL FKCPKVEVES IAETYGRIEK QPVLRPLELK 500
    TFLKVGNTSP DQKEPTPFII EWIPDILPQS KIGELRIKFE YGHHRNGHVA 550
    EYQDQRPPLD QPLELAPLTT ITFP 574
    Length:574
    Mass (Da):64,077
    Last modified:October 1, 2000 - v1
    Checksum:i53F6B0495328D7AA
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti314 – 3141Q → P.
    Corresponds to variant rs3213941 [ dbSNP | Ensembl ].
    VAR_050712

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL136834 mRNA. Translation: CAB66768.1.
    AK000565 mRNA. Translation: BAA91258.1.
    AK026303 mRNA. Translation: BAB15438.1.
    AC016700 Genomic DNA. Translation: AAX93192.1.
    CH471053 Genomic DNA. Translation: EAW99830.1.
    CH471053 Genomic DNA. Translation: EAW99831.1.
    BC002825 mRNA. Translation: AAH02825.1.
    BC005079 mRNA. Translation: AAH05079.1.
    CCDSiCCDS1899.1.
    RefSeqiNP_060350.1. NM_017880.1.
    XP_005264446.1. XM_005264389.1.
    XP_005264447.1. XM_005264390.1.
    XP_005264448.1. XM_005264391.1.
    UniGeneiHs.720049.

    Genome annotation databases

    EnsembliENST00000264434; ENSP00000264434; ENSG00000115998.
    ENST00000420306; ENSP00000404515; ENSG00000115998.
    GeneIDi54980.
    KEGGihsa:54980.
    UCSCiuc002sgh.3. human.

    Polymorphism databases

    DMDMi74734680.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL136834 mRNA. Translation: CAB66768.1 .
    AK000565 mRNA. Translation: BAA91258.1 .
    AK026303 mRNA. Translation: BAB15438.1 .
    AC016700 Genomic DNA. Translation: AAX93192.1 .
    CH471053 Genomic DNA. Translation: EAW99830.1 .
    CH471053 Genomic DNA. Translation: EAW99831.1 .
    BC002825 mRNA. Translation: AAH02825.1 .
    BC005079 mRNA. Translation: AAH05079.1 .
    CCDSi CCDS1899.1.
    RefSeqi NP_060350.1. NM_017880.1.
    XP_005264446.1. XM_005264389.1.
    XP_005264447.1. XM_005264390.1.
    XP_005264448.1. XM_005264391.1.
    UniGenei Hs.720049.

    3D structure databases

    ProteinModelPortali Q9NWW7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 120316. 2 interactions.
    IntActi Q9NWW7. 2 interactions.

    PTM databases

    PhosphoSitei Q9NWW7.

    Polymorphism databases

    DMDMi 74734680.

    Proteomic databases

    MaxQBi Q9NWW7.
    PaxDbi Q9NWW7.
    PRIDEi Q9NWW7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000264434 ; ENSP00000264434 ; ENSG00000115998 .
    ENST00000420306 ; ENSP00000404515 ; ENSG00000115998 .
    GeneIDi 54980.
    KEGGi hsa:54980.
    UCSCi uc002sgh.3. human.

    Organism-specific databases

    CTDi 54980.
    GeneCardsi GC02M070377.
    HGNCi HGNC:26056. C2orf42.
    HPAi HPA031841.
    HPA031842.
    neXtProti NX_Q9NWW7.
    PharmGKBi PA147358740.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG82445.
    HOGENOMi HOG000060318.
    HOVERGENi HBG100869.
    InParanoidi Q9NWW7.
    OMAi VENQCQH.
    OrthoDBi EOG7N8ZW0.
    PhylomeDBi Q9NWW7.
    TreeFami TF323774.

    Miscellaneous databases

    GenomeRNAii 54980.
    NextBioi 58246.

    Gene expression databases

    ArrayExpressi Q9NWW7.
    Bgeei Q9NWW7.
    Genevestigatori Q9NWW7.

    Family and domain databases

    InterProi IPR026049. C2orf42.
    IPR029269. Zf-tcix.
    [Graphical view ]
    PANTHERi PTHR13518. PTHR13518. 1 hit.
    Pfami PF14952. zf-tcix. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Signet-ring cell carcinoma and Small intestine.
    3. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
      Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
      , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
      Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Placenta and Skin.

    Entry informationi

    Entry nameiCB042_HUMAN
    AccessioniPrimary (citable) accession number: Q9NWW7
    Secondary accession number(s): D6W5G3, Q9H629
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 11, 2007
    Last sequence update: October 1, 2000
    Last modified: July 9, 2014
    This is version 94 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 2
      Human chromosome 2: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations

    External Data

    Dasty 3