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Q9NWF9 (RN216_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 103. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
E3 ubiquitin-protein ligase RNF216

EC=6.3.2.-
Alternative name(s):
RING finger protein 216
Triad domain-containing protein 3
Ubiquitin-conjugating enzyme 7-interacting protein 1
Zinc finger protein inhibiting NF-kappa-B
Gene names
Name:RNF216
Synonyms:TRIAD3, UBCE7IP1, ZIN
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length866 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Isoform 1 acts as an E3 ubiquitin ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by the proteasome. Promotes degradation of TRAF3, TLR4 and TLR9. Contributes to the regulation of antiviral responses. Down-regulates activation of NF-kappa-B, IRF3 activation and IFNB production. Isoform 3/ZIN inhibits TNF and IL-1 mediated activation of NF-kappa-B. Promotes TNF and RIP mediated apoptosis. Ref.2 Ref.10

Pathway

Protein modification; protein ubiquitination.

Subunit structure

Interacts with UBE2L3 and to some extent with UBE2L6. Interacts with TRAF3, TLR3, TLR4, TLR5 and TLR9. Isoform 3/ZIN binds RIPK1 and HIV VIF. Ref.1 Ref.2 Ref.8 Ref.10

Subcellular location

Cytoplasm.

Tissue specificity

Ubiquitous, with the highest levels of expression in testis and peripheral blood leukocytes.

Domain

The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme By similarity.

Post-translational modification

Auto-ubiquitinated.

Sequence similarities

Contains 1 IBR-type zinc finger.

Contains 2 RING-type zinc fingers.

Sequence caution

The sequence BAA91422.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

vifP125044EBI-723337,EBI-779991From a different organism.

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q9NWF9-2)

Also known as: TRIAD3A;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q9NWF9-1)

Also known as: TRIAD3B;

The sequence of this isoform differs from the canonical sequence as follows:
     67-67: E → ETNKPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSYFSVCNNPLFDSGAQ
Isoform 3 (identifier: Q9NWF9-3)

Also known as: ZIN; TRIAD3;

The sequence of this isoform differs from the canonical sequence as follows:
     1-378: Missing.
Note: 4 different alternatively spliced mRNAs code for this protein isoform.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 866866E3 ubiquitin-protein ligase RNF216
PRO_0000056293

Regions

Zinc finger515 – 56652RING-type 1
Zinc finger583 – 64866IBR-type
Zinc finger675 – 71440RING-type 2
Coiled coil475 – 49117 Potential
Coiled coil737 – 76327 Potential
Compositional bias769 – 86294Pro-rich

Amino acid modifications

Modified residue351Phosphoserine Ref.9

Natural variations

Alternative sequence1 – 378378Missing in isoform 3.
VSP_012443
Alternative sequence671E → ETNKPQRSRPNLIKPAAQWQ DLKRLGEERPKKSRAAFESD KSSYFSVCNNPLFDSGAQ in isoform 2.
VSP_012444

Experimental info

Sequence conflict4081L → F in AAL38043. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 (TRIAD3A) [UniParc].

Last modified January 4, 2005. Version 3.
Checksum: 6A46B66A6569DE74

FASTA86699,406
        10         20         30         40         50         60 
MEEGNNNEEV IHLNNFHCHR GQEWINLRDG PITISDSSDE ERIPMLVTPA PQQHEEEDLD 

        70         80         90        100        110        120 
DDVILTEDDS EDDYGEFLDL GPPGISEFTK PSGQTEREPK PGPSHNQAAN DIVNPRSEQK 

       130        140        150        160        170        180 
VIILEEGSLL YTESDPLETQ NQSSEDSETE LLSNLGESAA LADDQAIEED CWLDHPYFQS 

       190        200        210        220        230        240 
LNQQPREITN QVVPQERQPE AELGRLLFQH EFPGPAFPRP EPQQGGISGP SSPQPAHPLG 

       250        260        270        280        290        300 
EFEDQQLASD DEEPGPAFPM QESQEPNLEN IWGQEAAEVD QELVELLVKE TEARFPDVAN 

       310        320        330        340        350        360 
GFIEEIIHFK NYYDLNVLCN FLLENPDYPK REDRIIINPS SSLLASQDET KLPKIDFFDY 

       370        380        390        400        410        420 
SKLTPLDQRC FIQAADLLMA DFKVLSSQDI KWALHELKGH YAITRKALSD AIKKWQELSP 

       430        440        450        460        470        480 
ETSGKRKKRK QMNQYSYIDF KFEQGDIKIE KRMFFLENKR RHCRSYDRRA LLPAVQQEQE 

       490        500        510        520        530        540 
FYEQKIKEMA EHEDFLLALQ MNEEQYQKDG QLIECRCCYG EFPFEELTQC ADAHLFCKEC 

       550        560        570        580        590        600 
LIRYAQEAVF GSGKLELSCM EGSCTCSFPT SELEKVLPQT ILYKYYERKA EEEVAAAYAD 

       610        620        630        640        650        660 
ELVRCPSCSF PALLDSDVKR FSCPNPHCRK ETCRKCQGLW KEHNGLTCEE LAEKDDIKYR 

       670        680        690        700        710        720 
TSIEEKMTAA RIRKCHKCGT GLIKSEGCNR MSCRCGAQMC YLCRVSINGY DHFCQHPRSP 

       730        740        750        760        770        780 
GAPCQECSRC SLWTDPTEDD EKLIEEIQKE AEEEQKRKNG ENTFKRIGPP LEKPVEKVQR 

       790        800        810        820        830        840 
VEALPRPVPQ NLPQPQMPPY AFAHPPFPLP PVRPVFNNFP LNMGPIPAPY VPPLPNVRVN 

       850        860 
YDFGPIHMPL EHNLPMHFGP QPRHRF 

« Hide

Isoform 2 (TRIAD3B) [UniParc].

Checksum: FFAA15927AE14608
Show »

FASTA923105,882
Isoform 3 (ZIN) (TRIAD3) [UniParc].

Checksum: 6EB1D218DE2E4E6A
Show »

FASTA48856,697

References

« Hide 'large scale' references
[1]"A novel zinc finger protein interacts with receptor-interacting protein (RIP) and inhibits tumor necrosis factor (TNF)- and IL1-induced NF-kappa B activation."
Chen D., Li X., Zhai Z., Shu H.-B.
J. Biol. Chem. 277:15985-15991(2002) [PubMed: 11854271] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), INTERACTION WITH RIPK1.
[2]"Triad3A, an E3 ubiquitin-protein ligase regulating Toll-like receptors."
Chuang T.-H., Ulevitch R.J.
Nat. Immunol. 5:495-502(2004) [PubMed: 15107846] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), FUNCTION, INTERACTION WITH TLR3; TLR4; TLR5 AND TLR9.
Tissue: Placenta.
[3]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Tissue: Endometrium.
[4]"The DNA sequence of human chromosome 7."
Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L. expand/collapse author list , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
Nature 424:157-164(2003) [PubMed: 12853948] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Tissue: Kidney and Uterus.
[6]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 450-866 (ISOFORMS 1/2/3).
Tissue: Embryo.
[7]"Identification of a novel TRIAD protein, TRIAD3."
van der Reijden B.A., Jansen J.H.
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 509-866 (ISOFORMS 1/2/3).
[8]"Ring finger protein ZIN interacts with human immunodeficiency virus type 1 Vif."
Feng F., Davis A., Lake J.A., Carr J., Xia W., Burrell C., Li P.
J. Virol. 78:10574-10581(2004) [PubMed: 15367624] [Abstract]
Cited for: INTERACTION WITH HIV VIF PROTEIN (ISOFORM 3).
[9]"Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra."
Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D.
J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-35, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[10]"The E3 ubiquitin ligase Triad3A negatively regulates the RIG-I/MAVS signaling pathway by targeting TRAF3 for degradation."
Nakhaei P., Mesplede T., Solis M., Sun Q., Zhao T., Yang L., Chuang T.H., Ware C.F., Lin R., Hiscott J.
PLoS Pathog. 5:E1000650-E1000650(2009) [PubMed: 19893624] [Abstract]
Cited for: FUNCTION, INTERACTION WITH TRAF3.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY062174 mRNA. Translation: AAL38043.1.
AF513717 mRNA. Translation: AAP47174.1.
AF513718 mRNA. Translation: AAP47175.1.
AY177396 mRNA. Translation: AAO60361.1.
AY177397 mRNA. Translation: AAO60362.1.
AY177398 mRNA. Translation: AAO60363.1.
BX537406 mRNA. Translation: CAD97648.1.
AC008167 Genomic DNA. Translation: AAS07532.1.
BC000787 mRNA. Translation: AAH00787.2.
BC063825 mRNA. Translation: AAH63825.1.
AK000916 mRNA. Translation: BAA91422.1. Different initiation.
AF228527 mRNA. Translation: AAF36723.1.
IPIIPI00375632.
IPI00410033.
IPI00413022.
RefSeqNP_996994.1. NM_207111.3.
NP_996999.1. NM_207116.2.
UniGeneHs.487458.
Hs.689456.

3D structure databases

ProteinModelPortalQ9NWF9.
SMRQ9NWF9. Positions 512-568, 576-650, 667-711.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9NWF9. 3 interactions.
MINTMINT-1194402.
STRINGQ9NWF9.

PTM databases

PhosphoSiteQ9NWF9.

Polymorphism databases

DMDM57015417.

Proteomic databases

PRIDEQ9NWF9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000425013; ENSP00000404602; ENSG00000011275.
GeneID54476.
KEGGhsa:54476.
UCSCuc003sox.1. human.
uc003soy.1. human.

Organism-specific databases

CTD54476.
GeneCardsGC07M005661.
H-InvDBHIX0006456.
HIX0025299.
HGNCHGNC:21698. RNF216.
HPAHPA018955.
HPA021123.
MIM609948. gene.
neXtProtNX_Q9NWF9.
PharmGKBPA162401829.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG10173.
GeneTreeENSGT00510000048032.
HOVERGENHBG102854.
OMAGAQDDSE.
OrthoDBEOG4VDPXT.

Gene expression databases

ArrayExpressQ9NWF9.
BgeeQ9NWF9.
CleanExHS_RNF216.
GenevestigatorQ9NWF9.
GermOnlineENSG00000011275. Homo sapiens.

Family and domain databases

InterProIPR002867. Znf_C6HC.
[Graphical view]
KOK11976.
SMARTSM00647. IBR. 2 hits.
[Graphical view]
PROSITEPS00518. ZF_RING_1. False negative.
PS50089. ZF_RING_2. False negative.
[Graphical view]
ProtoNetSearch...

Other

NextBio56786.
SOURCESearch...

Entry information

Entry nameRN216_HUMAN
AccessionPrimary (citable) accession number: Q9NWF9
Secondary accession number(s): Q6Y691 expand/collapse secondary AC list , Q75ML7, Q7Z2H7, Q7Z7C1, Q8NHW7, Q9NYT1
Entry history
Integrated into UniProtKB/Swiss-Prot: September 26, 2001
Last sequence update: January 4, 2005
Last modified: December 14, 2011
This is version 103 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 7

Human chromosome 7: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families